Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1146181	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1217198	1.00[AMR][1000 genomes]
rs1217205	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1217207	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230636	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230641	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230644	1.00[AMR][1000 genomes]
rs1230648	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230650	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230651	1.00[AMR][1000 genomes]
rs1230652	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230653	1.00[AMR][1000 genomes]
rs1230654	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230657	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230660	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17031885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2636006	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2636009	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2757510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2757514	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797407	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797413	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
4	chr1:114096400-114108800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:114100200-114127600	Weak transcription	Ovary	ovary
6	chr1:114100600-114108800	Weak transcription	Fetal Lung	lung
7	chr1:114100600-114112600	Weak transcription	Esophagus	oesophagus
8	chr1:114100600-114118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:114100600-114118600	Weak transcription	Lung	lung
10	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
11	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
12	chr1:114100600-114173400	Weak transcription	Gastric	stomach
13	chr1:114100800-114109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:114101000-114112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:114105600-114109600	Weak transcription	Right Ventricle	heart
16	chr1:114107600-114109000	Enhancers	Dnd41	blood
17	chr1:114107800-114110400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:114108200-114108400	ZNF genes & repeats	Primary T cells from cord blood	blood

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