The 2.0 version of rSNPBase

Variant report

Variant rs1230643
Chromosome Location chr1:114263832-114263833
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114203200-114298600 Weak transcription Fetal Brain Male brain
2 chr1:114216200-114279800 Weak transcription Stomach Smooth Muscle stomach
3 chr1:114227000-114268200 Weak transcription NHLF lung
4 chr1:114228000-114287800 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:114236400-114300000 Weak transcription Small Intestine intestine
6 chr1:114238200-114264400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:114238400-114266800 Weak transcription NHEK skin
8 chr1:114239200-114279800 Weak transcription Colon Smooth Muscle Colon
9 chr1:114240200-114279400 Weak transcription Psoas Muscle Psoas
10 chr1:114242000-114300000 Weak transcription Rectal Smooth Muscle rectum
11 chr1:114242800-114269800 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr1:114245400-114270800 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:114245400-114275000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:114245600-114300600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr1:114248800-114290200 Weak transcription HMEC breast
16 chr1:114251000-114291400 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr1:114253000-114279400 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr1:114253000-114279600 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr1:114253200-114266800 Weak transcription HSMM muscle
20 chr1:114253400-114266800 Weak transcription Primary T cells fromperipheralblood blood
21 chr1:114254000-114272200 Weak transcription HSMMtube muscle
22 chr1:114254600-114277000 Weak transcription Adipose Nuclei Adipose
23 chr1:114254800-114266400 Weak transcription NHDF-Ad bronchial
24 chr1:114254800-114271800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:114256600-114283600 Weak transcription Brain Anterior Caudate brain
26 chr1:114256600-114288800 Weak transcription K562 blood
27 chr1:114256800-114277200 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:114257600-114283000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr1:114257600-114296200 Weak transcription Pancreas Pancrea
30 chr1:114258000-114267200 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:114258000-114300000 Weak transcription Right Ventricle heart
32 chr1:114258600-114265200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:114258600-114265800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:114259800-114265000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:114260000-114264200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
36 chr1:114260000-114264800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
37 chr1:114260000-114265000 ZNF genes & repeats Primary hematopoietic stem cells blood
38 chr1:114260000-114265200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:114260200-114264400 ZNF genes & repeats H1 Cell Line embryonic stem cell
40 chr1:114260200-114264400 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
41 chr1:114260200-114265000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
42 chr1:114260200-114265200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:114260200-114265200 ZNF genes & repeats Primary monocytes fromperipheralblood blood
44 chr1:114260400-114264200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
45 chr1:114260400-114264800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:114260600-114264400 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
47 chr1:114260600-114265000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:114261000-114269200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:114261200-114264200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:114261200-114264200 ZNF genes & repeats Fetal Muscle Leg muscle

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Last update: Aug 31, 2015