The 2.0 version of rSNPBase

Variant report

Variant rs1217420
Chromosome Location chr1:114402751-114402752
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114355800-114413000 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr1:114397800-114409800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:114399400-114403200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:114399400-114403200 Weak transcription HSMMtube muscle
5 chr1:114400200-114405600 Enhancers Primary neutrophils fromperipheralblood blood
6 chr1:114401400-114403200 Weak transcription Small Intestine intestine
7 chr1:114401600-114403800 Genic enhancers Primary T helper cells PMA-I stimulated --
8 chr1:114401600-114406000 Weak transcription Thymus Thymus
9 chr1:114401600-114409000 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr1:114401600-114412000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:114401800-114403000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
12 chr1:114401800-114403200 Flanking Active TSS Primary B cells from cord blood blood
13 chr1:114401800-114403200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:114401800-114403400 Enhancers Duodenum Mucosa Duodenum
15 chr1:114401800-114404000 Enhancers Primary T killer memory cells from peripheral blood blood
16 chr1:114401800-114404600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:114401800-114410800 Weak transcription Fetal Thymus thymus
18 chr1:114402000-114402800 Flanking Active TSS Primary hematopoietic stem cells blood
19 chr1:114402000-114402800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
20 chr1:114402000-114402800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr1:114402000-114402800 Enhancers Primary mononuclear cells fromperipheralblood Blood
22 chr1:114402000-114403400 Enhancers NHEK skin
23 chr1:114402000-114403800 Enhancers Primary T killer naive cells fromperipheralblood blood
24 chr1:114402000-114403800 Enhancers NHDF-Ad bronchial
25 chr1:114402000-114404000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr1:114402200-114402800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:114402200-114402800 Active TSS GM12878-XiMat blood
28 chr1:114402200-114403200 Enhancers NH-A brain
29 chr1:114402200-114403400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:114402200-114403400 Enhancers Muscle Satellite Cultured Cells --
31 chr1:114402200-114403400 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:114402200-114403600 Enhancers Primary T helper 17 cells PMA-I stimulated --
33 chr1:114402200-114403800 Enhancers Primary T regulatory cells fromperipheralblood blood
34 chr1:114402200-114404000 Enhancers HMEC breast
35 chr1:114402200-114404200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:114402200-114405400 Enhancers Primary T helper cells fromperipheralblood blood
37 chr1:114402400-114402800 Enhancers Adipose Nuclei Adipose
38 chr1:114402400-114403200 Enhancers Osteobl bone
39 chr1:114402400-114403400 Enhancers HUVEC blood vessel
40 chr1:114402400-114404600 Genic enhancers Primary T cells from cord blood blood
41 chr1:114402400-114406000 Weak transcription Dnd41 blood
42 chr1:114402600-114402800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:114402600-114402800 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
44 chr1:114402600-114402800 Enhancers Colonic Mucosa Colon
45 chr1:114402600-114403000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:114402600-114403000 Enhancers NHLF lung
47 chr1:114402600-114403400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:114402600-114403600 Enhancers Primary T helper naive cells from peripheral blood blood
49 chr1:114402600-114403800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
50 chr1:114402600-114403800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015