The 2.0 version of rSNPBase

Variant report

Variant rs1230682
Chromosome Location chr1:114293526-114293527
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114203200-114298600 Weak transcription Fetal Brain Male brain
2 chr1:114236400-114300000 Weak transcription Small Intestine intestine
3 chr1:114242000-114300000 Weak transcription Rectal Smooth Muscle rectum
4 chr1:114245600-114300600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:114257600-114296200 Weak transcription Pancreas Pancrea
6 chr1:114258000-114300000 Weak transcription Right Ventricle heart
7 chr1:114261400-114300000 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr1:114261400-114300600 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr1:114261400-114301000 Weak transcription Lung lung
10 chr1:114261600-114300200 Weak transcription Brain Angular Gyrus brain
11 chr1:114261600-114300600 Weak transcription Aorta Aorta
12 chr1:114261600-114300600 Weak transcription Esophagus oesophagus
13 chr1:114261600-114300600 Weak transcription Gastric stomach
14 chr1:114263600-114300000 Weak transcription Fetal Lung lung
15 chr1:114263600-114300400 Weak transcription Fetal Intestine Large intestine
16 chr1:114264000-114300400 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:114264200-114300000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:114267400-114299400 Weak transcription Primary T cells fromperipheralblood blood
19 chr1:114267400-114300000 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr1:114268400-114298000 Weak transcription A549 lung
21 chr1:114268600-114296200 Weak transcription Fetal Intestine Small intestine
22 chr1:114268800-114296400 Weak transcription NHLF lung
23 chr1:114268800-114299200 Weak transcription Fetal Brain Female brain
24 chr1:114269200-114296000 Weak transcription Ovary ovary
25 chr1:114272800-114300000 Weak transcription Primary B cells from cord blood blood
26 chr1:114277800-114299200 Weak transcription Brain Inferior Temporal Lobe brain
27 chr1:114279800-114300200 Weak transcription Fetal Kidney kidney
28 chr1:114280400-114299000 Weak transcription Brain Germinal Matrix brain
29 chr1:114280400-114300000 Weak transcription Psoas Muscle Psoas
30 chr1:114280400-114301400 Weak transcription Spleen Spleen
31 chr1:114280600-114296200 Weak transcription Fetal Muscle Trunk muscle
32 chr1:114280600-114300200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:114280600-114300200 Weak transcription Stomach Smooth Muscle stomach
34 chr1:114280800-114300000 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:114281200-114299200 Weak transcription Fetal Heart heart
36 chr1:114281200-114300000 Weak transcription Colon Smooth Muscle Colon
37 chr1:114281200-114300000 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr1:114283000-114294000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:114285600-114298600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr1:114285800-114296200 Weak transcription Fetal Muscle Leg muscle
41 chr1:114287000-114299200 Weak transcription Brain Hippocampus Middle brain
42 chr1:114287200-114300200 Weak transcription Brain Cingulate Gyrus brain
43 chr1:114287200-114300200 Weak transcription Brain Substantia Nigra brain
44 chr1:114288200-114298800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr1:114288200-114300000 Weak transcription Duodenum Mucosa Duodenum
46 chr1:114288400-114300000 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr1:114288600-114299200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:114288800-114300200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr1:114288800-114300200 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:114289000-114296400 Weak transcription H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015