The 2.0 version of rSNPBase

Variant report

Variant rs1230678
Chromosome Location chr1:114298420-114298421
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114203200-114298600 Weak transcription Fetal Brain Male brain
2 chr1:114236400-114300000 Weak transcription Small Intestine intestine
3 chr1:114242000-114300000 Weak transcription Rectal Smooth Muscle rectum
4 chr1:114245600-114300600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:114258000-114300000 Weak transcription Right Ventricle heart
6 chr1:114261400-114300000 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:114261400-114300600 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr1:114261400-114301000 Weak transcription Lung lung
9 chr1:114261600-114300200 Weak transcription Brain Angular Gyrus brain
10 chr1:114261600-114300600 Weak transcription Aorta Aorta
11 chr1:114261600-114300600 Weak transcription Esophagus oesophagus
12 chr1:114261600-114300600 Weak transcription Gastric stomach
13 chr1:114263600-114300000 Weak transcription Fetal Lung lung
14 chr1:114263600-114300400 Weak transcription Fetal Intestine Large intestine
15 chr1:114264000-114300400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:114264200-114300000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:114267400-114299400 Weak transcription Primary T cells fromperipheralblood blood
18 chr1:114267400-114300000 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr1:114268800-114299200 Weak transcription Fetal Brain Female brain
20 chr1:114272800-114300000 Weak transcription Primary B cells from cord blood blood
21 chr1:114277800-114299200 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:114279800-114300200 Weak transcription Fetal Kidney kidney
23 chr1:114280400-114299000 Weak transcription Brain Germinal Matrix brain
24 chr1:114280400-114300000 Weak transcription Psoas Muscle Psoas
25 chr1:114280400-114301400 Weak transcription Spleen Spleen
26 chr1:114280600-114300200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:114280600-114300200 Weak transcription Stomach Smooth Muscle stomach
28 chr1:114280800-114300000 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:114281200-114299200 Weak transcription Fetal Heart heart
30 chr1:114281200-114300000 Weak transcription Colon Smooth Muscle Colon
31 chr1:114281200-114300000 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:114285600-114298600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr1:114287000-114299200 Weak transcription Brain Hippocampus Middle brain
34 chr1:114287200-114300200 Weak transcription Brain Cingulate Gyrus brain
35 chr1:114287200-114300200 Weak transcription Brain Substantia Nigra brain
36 chr1:114288200-114298800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
37 chr1:114288200-114300000 Weak transcription Duodenum Mucosa Duodenum
38 chr1:114288400-114300000 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:114288600-114299200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:114288800-114300200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:114288800-114300200 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:114289000-114300000 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:114289200-114299200 Strong transcription HUES64 Cell Line embryonic stem cell
44 chr1:114289800-114299800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:114290000-114299000 Strong transcription Primary hematopoietic stem cells short term culture blood
46 chr1:114290400-114299000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:114290600-114299000 Weak transcription NHDF-Ad bronchial
48 chr1:114290600-114300400 Weak transcription Primary T helper cells PMA-I stimulated --
49 chr1:114290800-114300000 Weak transcription HMEC breast
50 chr1:114290800-114300200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015