Variant report

Variant	rs1217211
Chromosome Location	chr1:114149792-114149793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10745339	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858000	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858001	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10858002	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10858005	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10858007	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10858008	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858011	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10858017	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs10858018	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs10858019	0.81[EUR][1000 genomes]
rs11102648	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102649	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102651	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11102652	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102653	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102654	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102657	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11102658	0.93[ASN][1000 genomes]
rs11102661	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11102669	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1113523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146180	0.83[ASN][1000 genomes]
rs1146182	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1146187	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12021513	0.95[ASN][1000 genomes]
rs12035317	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12037873	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039224	0.95[ASN][1000 genomes]
rs12041547	0.82[CHB][hapmap]
rs12043639	0.93[ASN][1000 genomes]
rs12044534	0.81[EUR][1000 genomes]
rs12061482	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs12063216	0.81[EUR][1000 genomes]
rs12074958	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12077419	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1217192	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217193	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217199	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217200	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217201	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217203	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217204	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217208	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217210	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217214	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217215	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217221	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217223	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217226	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217227	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217228	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217230	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217232	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217233	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217234	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217235	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217236	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217237	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217377	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs1217380	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs1217396	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs1228280	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230638	0.81[EUR][1000 genomes]
rs1230639	0.81[EUR][1000 genomes]
rs1230640	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1230645	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1230647	0.82[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs1230649	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs1230655	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230656	0.89[ASN][1000 genomes]
rs1230658	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230659	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1230663	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1230671	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230678	0.81[EUR][1000 genomes]
rs1230679	0.81[EUR][1000 genomes]
rs1230685	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs1235687	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1235688	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237289	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565589	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343125	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1343128	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1418957	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1418958	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17013326	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17031716	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1743605	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1777234	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1777237	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1777238	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1777241	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1936398	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs1981319	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs2093436	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2153977	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2185971	0.81[YRI][hapmap]
rs2295853	0.82[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs2359167	0.86[CHB][hapmap]
rs2636002	0.92[ASN][1000 genomes]
rs2636013	0.83[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2636014	0.82[EUR][1000 genomes]
rs2797409	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs2797412	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs2798135	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2798138	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884703	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2884704	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4145859	0.82[CHB][hapmap]
rs4274063	0.92[ASN][1000 genomes]
rs4423005	0.82[EUR][1000 genomes]
rs4456089	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4565712	0.81[EUR][1000 genomes]
rs4600045	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs4838997	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4839335	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61820160	0.83[ASN][1000 genomes]
rs6537792	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537795	0.81[EUR][1000 genomes]
rs6663679	0.82[EUR][1000 genomes]
rs6689879	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes]
rs6698586	0.82[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs6704188	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs72687973	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72687980	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7522138	0.81[CHB][hapmap]
rs7536360	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7553188	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012324	chr1:114135133-114206843	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114100600-114173400	Weak transcription	Gastric	stomach
2	chr1:114119200-114172400	Weak transcription	Pancreas	Pancrea
3	chr1:114119200-114173000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:114124400-114172400	Weak transcription	Aorta	Aorta
5	chr1:114126600-114157200	Weak transcription	HUVEC	blood vessel
6	chr1:114134600-114166400	Weak transcription	Hela-S3	cervix
7	chr1:114136800-114158800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:114139800-114157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:114139800-114160000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:114140000-114157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:114140400-114157800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:114140600-114150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:114140600-114151000	Weak transcription	Ovary	ovary
14	chr1:114140600-114157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:114140600-114162200	Weak transcription	NHDF-Ad	bronchial
16	chr1:114140600-114172800	Weak transcription	Colonic Mucosa	Colon
17	chr1:114140800-114162600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:114141000-114157800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:114141000-114162600	Weak transcription	Fetal Intestine Large	intestine
20	chr1:114141200-114156800	Weak transcription	Fetal Heart	heart
21	chr1:114141200-114162200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:114141400-114157000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:114141400-114162400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:114141600-114150600	Weak transcription	Liver	Liver
25	chr1:114145600-114152800	Weak transcription	Lung	lung
26	chr1:114145600-114153200	Weak transcription	Fetal Stomach	stomach
27	chr1:114145600-114157600	Weak transcription	Fetal Brain Female	brain
28	chr1:114145600-114160800	Weak transcription	Fetal Intestine Small	intestine
29	chr1:114146200-114163200	Weak transcription	Fetal Lung	lung
30	chr1:114147200-114163400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:114149000-114151200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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