Variant report

Variant	rs1418957
Chromosome Location	chr1:114110901-114110902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114110456..114112451-chr1:114117714..114119729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238256	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10745339	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10858000	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10858001	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10858002	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10858007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10858008	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10858011	0.89[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11102648	0.95[ASN][1000 genomes]
rs11102649	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11102651	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102652	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11102653	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11102654	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11102657	0.90[ASN][1000 genomes]
rs11102658	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11102661	0.93[ASN][1000 genomes]
rs11102669	0.91[ASN][1000 genomes]
rs1113523	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1146182	0.94[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1146187	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12021513	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12035317	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12037873	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12039224	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12043639	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12074958	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12077419	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1217192	0.89[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1217193	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1217199	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1217200	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1217201	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1217203	0.94[ASN][1000 genomes]
rs1217204	0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1217208	0.94[ASN][1000 genomes]
rs1217210	0.93[ASN][1000 genomes]
rs1217211	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1217214	0.92[ASN][1000 genomes]
rs1217215	0.94[ASN][1000 genomes]
rs1217221	0.87[ASN][1000 genomes]
rs1217223	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1217226	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1217227	0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1217228	0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1217230	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1217232	0.94[ASN][1000 genomes]
rs1217233	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1217234	0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1217235	0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1217236	0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1217237	0.94[ASN][1000 genomes]
rs1228280	0.91[ASN][1000 genomes]
rs1230655	0.91[ASN][1000 genomes]
rs1230656	0.85[ASN][1000 genomes]
rs1230658	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1230659	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1230661	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1230663	0.85[ASN][1000 genomes]
rs1230671	0.93[ASN][1000 genomes]
rs1235687	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1235688	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1237289	0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12565589	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1343125	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1343128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1343629	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1418958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17013326	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17031716	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1743605	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1777234	0.92[ASN][1000 genomes]
rs1777237	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1777238	0.91[ASN][1000 genomes]
rs1777241	0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2153977	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636002	0.87[ASN][1000 genomes]
rs2798135	0.92[ASN][1000 genomes]
rs2798138	0.93[ASN][1000 genomes]
rs2884703	1.00[ASN][1000 genomes]
rs2884704	0.93[ASN][1000 genomes]
rs4259646	0.81[YRI][hapmap]
rs4274063	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4456089	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4838997	0.91[ASN][1000 genomes]
rs4839335	0.87[ASN][1000 genomes]
rs6537790	0.81[YRI][hapmap]
rs6537792	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6689879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6704188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72687973	0.88[ASN][1000 genomes]
rs72687980	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7536360	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7554019	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
2	chr1:114100200-114127600	Weak transcription	Ovary	ovary
3	chr1:114100600-114112600	Weak transcription	Esophagus	oesophagus
4	chr1:114100600-114118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:114100600-114118600	Weak transcription	Lung	lung
6	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
7	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
8	chr1:114100600-114173400	Weak transcription	Gastric	stomach
9	chr1:114101000-114112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:114110800-114139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links