The 2.0 version of rSNPBase

Variant report

Variant rs6689879
Chromosome Location chr1:114101719-114101720
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114083400-114110000 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr1:114085600-114101800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr1:114088200-114102000 Weak transcription Colon Smooth Muscle Colon
4 chr1:114088600-114109800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:114091200-114101800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:114094000-114104600 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr1:114094800-114103000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:114094800-114138400 Weak transcription NHDF-Ad bronchial
9 chr1:114095000-114102200 Weak transcription Placenta Placenta
10 chr1:114095600-114108200 Weak transcription Primary T cells from cord blood blood
11 chr1:114096400-114108800 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:114098600-114106600 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:114098800-114101800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:114098800-114103200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:114099000-114102800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:114099800-114104400 Weak transcription Fetal Heart heart
17 chr1:114100200-114102400 Weak transcription Liver Liver
18 chr1:114100200-114127600 Weak transcription Ovary ovary
19 chr1:114100600-114101800 Weak transcription Duodenum Mucosa Duodenum
20 chr1:114100600-114102000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:114100600-114102000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:114100600-114102200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:114100600-114102200 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr1:114100600-114106000 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:114100600-114106600 Weak transcription Aorta Aorta
26 chr1:114100600-114107600 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr1:114100600-114108200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:114100600-114108800 Weak transcription Fetal Lung lung
29 chr1:114100600-114112600 Weak transcription Esophagus oesophagus
30 chr1:114100600-114118200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr1:114100600-114118600 Weak transcription Lung lung
32 chr1:114100600-114118800 Weak transcription Pancreas Pancrea
33 chr1:114100600-114140200 Weak transcription Left Ventricle heart
34 chr1:114100600-114173400 Weak transcription Gastric stomach
35 chr1:114100800-114109600 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:114101000-114112600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015