Variant report

Variant	rs1743605
Chromosome Location	chr1:114207314-114207315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10745339	0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10858000	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10858001	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10858002	0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10858005	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858007	0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858008	0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10858011	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10858017	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10858018	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10858019	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10858021	0.85[EUR][1000 genomes]
rs11102648	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11102649	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11102651	0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11102652	0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102653	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11102654	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11102657	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11102658	0.90[ASN][1000 genomes]
rs11102661	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11102669	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1111695	0.89[LWK][hapmap]
rs1113523	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1146180	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1146182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1146187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12021513	0.92[ASN][1000 genomes]
rs12035317	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12037873	0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12039224	0.92[ASN][1000 genomes]
rs12041547	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs12043639	0.90[ASN][1000 genomes]
rs12044534	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12061482	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12063216	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12074958	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12077419	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217192	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217199	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217201	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217203	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217204	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1217208	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217210	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217211	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217214	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1217215	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217221	0.87[ASN][1000 genomes]
rs1217223	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217226	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217227	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217228	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1217230	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217232	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217233	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217234	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217235	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217236	0.82[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217237	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217376	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1217377	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1217380	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1217388	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs1217389	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs1217395	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs1217396	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1217407	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs1217410	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs1217412	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs1217413	0.82[CEU][hapmap];0.85[CHB][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1217421	0.86[EUR][1000 genomes]
rs1228280	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230637	0.81[EUR][1000 genomes]
rs1230638	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1230639	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1230640	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1230645	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1230646	0.84[EUR][1000 genomes]
rs1230647	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1230649	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1230655	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230656	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230661	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230663	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230671	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1230674	0.93[EUR][1000 genomes]
rs1230678	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1230679	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1230683	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1230685	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1230687	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1235687	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1235688	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1237289	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1237682	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs12565589	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12566340	0.83[EUR][1000 genomes]
rs1343125	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1343128	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1418957	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1418958	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1599971	0.88[EUR][1000 genomes]
rs17013326	0.81[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17031716	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs1775754	0.85[EUR][1000 genomes]
rs1777234	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1777237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1777238	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1777241	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935838	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1936398	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1981319	0.89[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2093436	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2153977	0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2295853	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2359167	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs2488458	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs2636002	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2636013	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2636014	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2797408	0.91[EUR][1000 genomes]
rs2797409	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs2797412	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2798135	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2798138	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2884703	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884704	0.86[ASN][1000 genomes]
rs4145859	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs4274063	0.89[ASN][1000 genomes]
rs4423005	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4456089	0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4565712	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4600045	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4838997	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4839335	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61817589	0.82[EUR][1000 genomes]
rs61820160	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6537792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6537795	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6663679	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6669008	0.85[CHD][hapmap]
rs6689879	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6698586	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6704188	0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs72687973	0.82[ASN][1000 genomes]
rs72687980	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7522138	0.81[CHB][hapmap]
rs7529353	0.83[EUR][1000 genomes]
rs7536360	0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7553188	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9429730	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1743605	BCL2L15	cis	cerebellum	SCAN
rs1743605	MAGI3	cis	parietal	SCAN
rs1743605	CAPZA1	cis	parietal	SCAN
rs1743605	MAGI3	cis	cerebellum	SCAN
rs1743605	PHTF1	cis	cerebellum	SCAN
rs1743605	PHTF1	cis	parietal	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114171600-114241400	Weak transcription	Right Ventricle	heart
2	chr1:114173000-114214400	Weak transcription	Esophagus	oesophagus
3	chr1:114173000-114226800	Weak transcription	Aorta	Aorta
4	chr1:114173800-114214400	Weak transcription	Pancreas	Pancrea
5	chr1:114173800-114236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:114179800-114239600	Weak transcription	Spleen	Spleen
7	chr1:114182000-114219600	Weak transcription	Fetal Kidney	kidney
8	chr1:114182800-114217400	Weak transcription	NHDF-Ad	bronchial
9	chr1:114183000-114235800	Weak transcription	Dnd41	blood
10	chr1:114183400-114215800	Weak transcription	Fetal Lung	lung
11	chr1:114183600-114216400	Weak transcription	A549	lung
12	chr1:114185200-114224400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:114185400-114214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:114185400-114228000	Weak transcription	HepG2	liver
15	chr1:114185800-114223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:114190000-114217600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:114190000-114220000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:114190200-114214000	Weak transcription	Placenta	Placenta
19	chr1:114194000-114223600	Weak transcription	Left Ventricle	heart
20	chr1:114194200-114215200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:114195600-114214400	Weak transcription	Adipose Nuclei	Adipose
22	chr1:114196600-114226400	Weak transcription	Gastric	stomach
23	chr1:114196800-114214400	Weak transcription	Ovary	ovary
24	chr1:114197000-114214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:114197600-114214600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:114200200-114227800	Weak transcription	Stomach Mucosa	stomach
27	chr1:114200400-114214400	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:114200400-114215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:114201600-114219400	Weak transcription	Fetal Heart	heart
30	chr1:114202000-114241400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:114202400-114214000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:114202400-114214400	Weak transcription	Lung	lung
33	chr1:114202400-114220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:114203000-114214600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr1:114203000-114232000	Weak transcription	Fetal Brain Female	brain
36	chr1:114203000-114237800	Weak transcription	NH-A	brain
37	chr1:114203200-114211600	Weak transcription	Primary T cells from cord blood	blood
38	chr1:114203200-114213800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr1:114203200-114214200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr1:114203200-114224800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:114203200-114232200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:114203200-114237600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:114203200-114298600	Weak transcription	Fetal Brain Male	brain
44	chr1:114203400-114209000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr1:114203400-114215800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:114203400-114217200	Weak transcription	Colonic Mucosa	Colon
47	chr1:114203400-114237800	Weak transcription	Brain Angular Gyrus	brain
48	chr1:114203600-114208600	Weak transcription	Fetal Intestine Small	intestine
49	chr1:114203600-114214200	Weak transcription	Fetal Stomach	stomach
50	chr1:114204200-114207600	Enhancers	Primary monocytes fromperipheralblood	blood

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