Variant report

Variant	rs2797409
Chromosome Location	chr1:114330202-114330203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114295717..114297423-chr1:114329273..114331553,2	MCF-7	breast:
2	chr1:114323264..114325037-chr1:114328187..114331167,2	MCF-7	breast:
3	chr1:114328514..114333064-chr1:114341407..114344891,4	MCF-7	breast:
4	chr1:114327966..114331682-chr1:114351317..114354646,4	K562	blood:
5	chr1:114320682..114322921-chr1:114329159..114331168,2	K562	blood:
6	chr1:114328778..114330524-chr1:114356002..114358094,2	K562	blood:
7	chr1:114328870..114331856-chr1:114340640..114342248,2	K562	blood:
8	chr1:114317996..114324872-chr1:114329159..114335059,8	K562	blood:
9	chr1:114322719..114325037-chr1:114328729..114331001,2	MCF-7	breast:
10	chr1:114329880..114331707-chr1:114332071..114335621,3	K562	blood:
11	chr1:114300369..114304459-chr1:114329626..114333036,4	MCF-7	breast:
12	chr1:114304517..114306177-chr1:114329142..114331012,2	K562	blood:
13	chr1:114327292..114330449-chr1:114353536..114357083,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000116793	Chromatin interaction
ENSG00000231128	Chromatin interaction
ENSG00000081019	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10858005	0.80[EUR][1000 genomes]
rs10858007	0.81[EUR][1000 genomes]
rs10858011	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs10858017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10858018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10858019	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10858021	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11102653	0.80[EUR][1000 genomes]
rs11102654	0.80[EUR][1000 genomes]
rs11102661	0.85[EUR][1000 genomes]
rs11102669	0.91[EUR][1000 genomes]
rs11102689	0.80[EUR][1000 genomes]
rs11102691	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs1113523	0.81[EUR][1000 genomes]
rs1146182	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs1146183	0.85[ASW][hapmap];0.83[YRI][hapmap]
rs1146187	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs12041547	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12044534	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12061482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12063216	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12077419	0.80[EUR][1000 genomes]
rs1217192	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217193	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs1217199	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1217200	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217201	0.81[EUR][1000 genomes]
rs1217203	0.81[EUR][1000 genomes]
rs1217204	0.81[EUR][1000 genomes]
rs1217210	0.91[EUR][1000 genomes]
rs1217211	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1217214	0.80[EUR][1000 genomes]
rs1217215	0.80[EUR][1000 genomes]
rs1217223	0.81[EUR][1000 genomes]
rs1217226	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs1217227	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1217228	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1217230	0.81[EUR][1000 genomes]
rs1217232	0.81[EUR][1000 genomes]
rs1217233	0.81[EUR][1000 genomes]
rs1217234	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs1217235	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1217236	0.82[CEU][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs1217237	0.81[EUR][1000 genomes]
rs1217376	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217377	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217379	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs1217380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217386	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217407	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217413	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217415	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs1217416	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217421	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230637	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1230638	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230639	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230642	0.82[ASN][1000 genomes]
rs1230645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230646	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1230647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230655	0.91[EUR][1000 genomes]
rs1230656	0.82[EUR][1000 genomes]
rs1230658	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1230659	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1230661	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs1230663	0.87[EUR][1000 genomes]
rs1230671	0.91[EUR][1000 genomes]
rs1230674	0.85[EUR][1000 genomes]
rs1230678	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230679	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230683	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1230685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230687	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1235687	0.81[EUR][1000 genomes]
rs1235688	0.81[EUR][1000 genomes]
rs1237289	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1237682	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12565589	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs12566340	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs1343125	0.81[EUR][1000 genomes]
rs1343128	0.80[EUR][1000 genomes]
rs1418958	0.81[EUR][1000 genomes]
rs1599971	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17031716	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1743605	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs1746853	0.81[CHB][hapmap]
rs1775754	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1777234	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1777237	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs1777238	0.91[EUR][1000 genomes]
rs1777241	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs1935838	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1981319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2093436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2243471	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359167	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2476600	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs2488457	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2488458	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636002	0.81[EUR][1000 genomes]
rs2636013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2636014	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2797408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2797412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797416	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs2798135	0.90[EUR][1000 genomes]
rs2798138	0.90[EUR][1000 genomes]
rs4145859	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4423005	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4565712	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4600045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4838997	0.92[EUR][1000 genomes]
rs4838998	0.82[ASN][1000 genomes]
rs4839335	0.93[EUR][1000 genomes]
rs61817589	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6537792	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs6537795	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6663679	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6698586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72687980	0.80[EUR][1000 genomes]
rs7526209	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7529353	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs7536360	0.81[EUR][1000 genomes]
rs7553188	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7555634	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs9429730	1.00[CEU][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv831093	chr1:114254167-114378235	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2797409	PHTF1	cis	cerebellum	SCAN
rs2797409	MAGI3	cis	parietal	SCAN
rs2797409	MAGI3	cis	cerebellum	SCAN
rs2797409	PHTF1	cis	parietal	SCAN
rs2797409	BCL2L15	cis	cerebellum	SCAN
rs2797409	CAPZA1	cis	parietal	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114303400-114353800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:114309600-114353400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:114311000-114335600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:114311000-114336800	Weak transcription	Fetal Kidney	kidney
5	chr1:114311000-114341800	Weak transcription	Esophagus	oesophagus
6	chr1:114319800-114352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:114320000-114336200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:114320000-114340000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:114320000-114354000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:114320200-114337200	Weak transcription	Placenta	Placenta
11	chr1:114320400-114331600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:114320400-114337200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:114320600-114331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:114323800-114330600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:114326600-114330800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:114326600-114335000	Weak transcription	Fetal Stomach	stomach
17	chr1:114326600-114335200	Weak transcription	HMEC	breast
18	chr1:114326600-114337800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:114326800-114335200	Weak transcription	HUVEC	blood vessel
20	chr1:114326800-114335800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:114326800-114335800	Weak transcription	NH-A	brain
22	chr1:114326800-114338600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:114326800-114340000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:114327000-114330800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:114327000-114335000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:114327000-114335200	Weak transcription	NHDF-Ad	bronchial
27	chr1:114327000-114336000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr1:114327000-114337000	Weak transcription	Brain Germinal Matrix	brain
29	chr1:114327200-114331600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:114327200-114331600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:114327200-114331800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:114327200-114332000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:114327200-114333200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:114327200-114334800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:114327200-114337400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:114327400-114330800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:114327400-114330800	Weak transcription	Brain Angular Gyrus	brain
38	chr1:114327400-114331200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr1:114327400-114331200	Weak transcription	Stomach Mucosa	stomach
40	chr1:114327400-114331400	Weak transcription	Pancreas	Pancrea
41	chr1:114327400-114331600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr1:114327400-114331600	Weak transcription	Fetal Intestine Small	intestine
43	chr1:114327400-114331600	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:114327400-114331600	Weak transcription	Gastric	stomach
45	chr1:114327400-114331600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:114327400-114331600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr1:114327400-114331800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:114327400-114331800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:114327400-114331800	Weak transcription	Left Ventricle	heart
50	chr1:114327400-114331800	Weak transcription	Lung	lung

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