Variant report

Variant	rs1936398
Chromosome Location	chr1:114246453-114246454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114222246..114224526-chr1:114245061..114247466,2	K562	blood:
2	chr1:114245736..114247405-chr1:114353848..114355916,2	MCF-7	breast:
3	chr1:114240657..114244104-chr1:114245278..114249575,4	MCF-7	breast:
4	chr1:114245435..114247112-chr1:114247125..114248909,2	MCF-7	breast:
5	chr1:114244773..114247949-chr1:114249396..114252408,3	MCF-7	breast:
6	chr1:114245611..114248593-chr1:114296765..114298290,2	K562	blood:

Variant related genes	Relation type
ENSG00000231128	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000081019	Chromatin interaction
ENSG00000232450	Chromatin interaction

Extended variants
information (count: 156 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10745339	0.82[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs10858000	0.82[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs10858005	0.82[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs10858007	0.82[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs10858008	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs10858011	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs10858016	0.94[AFR][1000 genomes]
rs10858017	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10858018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10858019	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858021	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11102648	0.81[EUR][1000 genomes]
rs11102652	0.82[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs11102653	0.84[EUR][1000 genomes]
rs11102654	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs11102657	0.83[EUR][1000 genomes]
rs11102661	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11102669	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11102691	0.95[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs1111695	0.89[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1113523	0.82[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1146180	0.81[AMR][1000 genomes]
rs1146182	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1146187	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12035317	0.82[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs12037873	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs12041547	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12044534	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12061482	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12063216	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12074958	0.82[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs12077419	0.84[EUR][1000 genomes]
rs1217192	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1217193	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1217199	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs1217200	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1217201	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217203	0.85[EUR][1000 genomes]
rs1217204	0.85[EUR][1000 genomes]
rs1217208	0.83[EUR][1000 genomes]
rs1217210	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1217211	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs1217214	0.84[EUR][1000 genomes]
rs1217215	0.84[EUR][1000 genomes]
rs1217223	0.85[EUR][1000 genomes]
rs1217226	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs1217227	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217228	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217230	0.84[EUR][1000 genomes]
rs1217232	0.85[EUR][1000 genomes]
rs1217233	0.85[EUR][1000 genomes]
rs1217234	0.89[ASW][hapmap];0.82[CEU][hapmap];0.81[CHB][hapmap];0.96[LWK][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217235	0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs1217236	0.82[CEU][hapmap];0.94[GIH][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1217237	0.85[EUR][1000 genomes]
rs1217376	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217377	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217386	0.86[ASN][1000 genomes]
rs1217388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217407	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217413	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1217415	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs1217416	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1217421	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1228280	0.81[EUR][1000 genomes]
rs1230637	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230638	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1230639	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1230640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230642	0.91[ASN][1000 genomes]
rs1230645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230646	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230655	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1230656	0.88[EUR][1000 genomes]
rs1230658	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1230659	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1230661	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs1230663	0.92[EUR][1000 genomes]
rs1230671	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1230674	0.90[EUR][1000 genomes]
rs1230678	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230679	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230683	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1230685	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230687	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1235687	0.85[EUR][1000 genomes]
rs1235688	0.85[EUR][1000 genomes]
rs1237289	0.82[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs1237682	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12565589	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12566340	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs12760067	0.85[ASN][1000 genomes]
rs1343125	0.82[CEU][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs1343128	0.85[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs1418958	0.82[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs1599971	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17013326	0.81[CEU][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs17031716	0.86[CHB][hapmap];0.81[TSI][hapmap]
rs1743605	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1746853	0.81[CHB][hapmap]
rs1775754	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1777234	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1777237	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1777238	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1777241	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1935838	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1981319	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2185971	0.81[ASW][hapmap]
rs2243471	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2295853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359167	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2488457	0.90[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs2488458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2636002	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2636013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636014	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797408	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2797409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2797412	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2797414	0.81[ASW][hapmap];0.83[YRI][hapmap]
rs2798135	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2798138	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2884703	0.83[EUR][1000 genomes]
rs4145859	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4423005	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456089	0.82[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs4565712	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4600045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838997	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4838998	0.87[ASN][1000 genomes]
rs4839335	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61817589	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61820160	0.81[EUR][1000 genomes]
rs6537792	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6537795	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6663679	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689879	0.81[CHB][hapmap]
rs6698586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704188	0.81[CHB][hapmap];0.83[MEX][hapmap]
rs72687980	0.84[EUR][1000 genomes]
rs7526209	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529353	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs7536360	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs7553188	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9429730	1.00[CEU][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1936398	PHTF1	cis	parietal	SCAN
rs1936398	MAGI3	cis	parietal	SCAN
rs1936398	PHTF1	cis	cerebellum	SCAN
rs1936398	CAPZA1	cis	parietal	SCAN
rs1936398	MAGI3	cis	cerebellum	SCAN
rs1936398	BCL2L15	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114203200-114298600	Weak transcription	Fetal Brain Male	brain
2	chr1:114216000-114247000	Weak transcription	HMEC	breast
3	chr1:114216200-114279800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:114216400-114250400	Weak transcription	Placenta	Placenta
5	chr1:114220400-114263800	Weak transcription	Fetal Kidney	kidney
6	chr1:114227000-114268200	Weak transcription	NHLF	lung
7	chr1:114227400-114252000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:114228000-114287800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:114228400-114249800	Weak transcription	Hela-S3	cervix
10	chr1:114231000-114251200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:114236400-114300000	Weak transcription	Small Intestine	intestine
12	chr1:114237400-114256600	Weak transcription	Colonic Mucosa	Colon
13	chr1:114238000-114251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:114238000-114252800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:114238000-114258200	Weak transcription	Fetal Heart	heart
16	chr1:114238200-114250200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:114238200-114252200	Weak transcription	Fetal Brain Female	brain
18	chr1:114238200-114256000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:114238200-114264400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:114238400-114266800	Weak transcription	NHEK	skin
21	chr1:114238800-114251000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:114238800-114252400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:114238800-114252800	Weak transcription	Fetal Intestine Large	intestine
24	chr1:114238800-114252800	Weak transcription	K562	blood
25	chr1:114239000-114260400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:114239200-114279800	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:114239400-114258600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:114239600-114249800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:114239800-114250800	Weak transcription	HepG2	liver
30	chr1:114240200-114260800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:114240200-114279400	Weak transcription	Psoas Muscle	Psoas
32	chr1:114242000-114247000	Weak transcription	NH-A	brain
33	chr1:114242000-114300000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:114242200-114246600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:114242200-114246600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:114242200-114246800	Weak transcription	Adipose Nuclei	Adipose
37	chr1:114242200-114246800	Weak transcription	Liver	Liver
38	chr1:114242200-114247200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:114242200-114247600	Weak transcription	Fetal Stomach	stomach
40	chr1:114242200-114248600	Weak transcription	Dnd41	blood
41	chr1:114242200-114249200	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:114242200-114249400	Weak transcription	Lung	lung
43	chr1:114242200-114249600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:114242200-114249600	Weak transcription	HSMM	muscle
45	chr1:114242200-114250000	Weak transcription	Brain Angular Gyrus	brain
46	chr1:114242200-114250200	Weak transcription	Left Ventricle	heart
47	chr1:114242200-114250400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:114242200-114250400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:114242200-114250400	Weak transcription	Brain Anterior Caudate	brain
50	chr1:114242200-114250400	Weak transcription	Fetal Muscle Trunk	muscle

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