The 2.0 version of rSNPBase

Variant report

Variant rs1217223
Chromosome Location chr1:114140889-114140890
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114100600-114173400 Weak transcription Gastric stomach
2 chr1:114119200-114145200 Weak transcription Lung lung
3 chr1:114119200-114172400 Weak transcription Pancreas Pancrea
4 chr1:114119200-114173000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:114122800-114142600 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:114124400-114172400 Weak transcription Aorta Aorta
7 chr1:114126600-114157200 Weak transcription HUVEC blood vessel
8 chr1:114132600-114143200 Weak transcription NH-A brain
9 chr1:114133400-114141000 Weak transcription HMEC breast
10 chr1:114134600-114166400 Weak transcription Hela-S3 cervix
11 chr1:114135400-114141600 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr1:114135800-114141800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:114136200-114141200 Strong transcription Rectal Mucosa Donor 31 rectum
14 chr1:114136800-114142000 Weak transcription Brain Angular Gyrus brain
15 chr1:114136800-114158800 Weak transcription Stomach Smooth Muscle stomach
16 chr1:114137000-114141800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:114137000-114142000 Weak transcription HSMMtube muscle
18 chr1:114137000-114142400 Weak transcription Fetal Thymus thymus
19 chr1:114137000-114144000 Weak transcription Colon Smooth Muscle Colon
20 chr1:114137000-114145200 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:114137400-114141400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:114138000-114142600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr1:114138400-114141000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:114138800-114141000 ZNF genes & repeats Fetal Intestine Large intestine
25 chr1:114138800-114141200 ZNF genes & repeats Primary T cells from cord blood blood
26 chr1:114138800-114141200 Weak transcription Brain Cingulate Gyrus brain
27 chr1:114138800-114141400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:114138800-114141400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:114138800-114141600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:114139400-114141000 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:114139400-114141200 ZNF genes & repeats Fetal Brain Female brain
32 chr1:114139400-114141400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:114139400-114142000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:114139600-114141600 ZNF genes & repeats Liver Liver
35 chr1:114139800-114141400 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
36 chr1:114139800-114157400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:114139800-114160000 Weak transcription Rectal Smooth Muscle rectum
38 chr1:114140000-114141800 Weak transcription HSMM muscle
39 chr1:114140000-114157400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:114140200-114141000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
41 chr1:114140200-114141000 ZNF genes & repeats Fetal Intestine Small intestine
42 chr1:114140400-114141000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
43 chr1:114140400-114141000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:114140400-114142000 Weak transcription Placenta Placenta
45 chr1:114140400-114157800 Weak transcription Muscle Satellite Cultured Cells --
46 chr1:114140600-114141800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:114140600-114145400 Weak transcription A549 lung
48 chr1:114140600-114150600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:114140600-114151000 Weak transcription Ovary ovary
50 chr1:114140600-114157000 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015