Variant report

Variant	rs1217227
Chromosome Location	chr1:114139616-114139617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114135355..114138035-chr1:114138572..114141485,2	MCF-7	breast:

Extended variants
information (count: 137 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10745339	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858000	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858001	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10858002	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs10858005	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10858007	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10858008	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10858017	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs10858018	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs10858019	0.81[EUR][1000 genomes]
rs11102648	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102649	0.90[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102651	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs11102652	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102653	0.88[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102654	0.89[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11102657	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11102658	0.93[ASN][1000 genomes]
rs11102661	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11102669	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1113523	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146180	0.83[ASN][1000 genomes]
rs1146182	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1146187	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12021513	0.95[ASN][1000 genomes]
rs12035317	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12037873	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039224	0.95[ASN][1000 genomes]
rs12041547	0.81[CHB][hapmap]
rs12043639	0.93[ASN][1000 genomes]
rs12044534	0.81[EUR][1000 genomes]
rs12061482	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs12063216	0.81[EUR][1000 genomes]
rs12074958	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12077419	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1217192	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217193	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217200	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217203	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217204	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1217208	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217210	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217211	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217214	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217215	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217221	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217228	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217232	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217236	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217237	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217377	0.80[EUR][1000 genomes]
rs1217380	0.80[EUR][1000 genomes]
rs1217396	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs1217412	0.80[EUR][1000 genomes]
rs1228280	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230638	0.81[EUR][1000 genomes]
rs1230639	0.81[EUR][1000 genomes]
rs1230640	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1230645	0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1230647	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs1230649	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1230655	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230656	0.89[ASN][1000 genomes]
rs1230658	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230659	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230661	0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.90[ASN][1000 genomes]
rs1230663	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1230671	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230674	0.80[EUR][1000 genomes]
rs1230678	0.81[EUR][1000 genomes]
rs1230679	0.81[EUR][1000 genomes]
rs1230685	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1230687	0.80[EUR][1000 genomes]
rs1235687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1235688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565589	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343125	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1343128	0.95[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1343629	0.82[YRI][hapmap]
rs1418957	0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1418958	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17013326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17031716	0.85[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1743605	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1777234	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1777237	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1777238	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1777241	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1936398	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1981319	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs2093436	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2153977	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs2185971	0.81[ASW][hapmap];0.83[LWK][hapmap];0.94[YRI][hapmap]
rs2273758	0.83[ASW][hapmap];0.88[YRI][hapmap]
rs2295853	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2359167	0.81[CHB][hapmap];0.82[GIH][hapmap];0.81[TSI][hapmap]
rs2636002	0.92[ASN][1000 genomes]
rs2636013	0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2636014	0.82[EUR][1000 genomes]
rs2797408	0.81[EUR][1000 genomes]
rs2797409	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2797412	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2798135	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2798138	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884703	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2884704	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4145859	0.81[CHB][hapmap]
rs4274063	0.92[ASN][1000 genomes]
rs4423005	0.82[EUR][1000 genomes]
rs4456089	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4565712	0.81[EUR][1000 genomes]
rs4600045	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs4838997	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4839335	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61820160	0.83[ASN][1000 genomes]
rs6537792	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537795	0.81[EUR][1000 genomes]
rs6663679	0.82[EUR][1000 genomes]
rs6669008	0.82[CHD][hapmap]
rs6689879	0.89[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs6698586	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs6704188	0.89[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes]
rs72687973	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72687980	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7536360	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7553188	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012324	chr1:114135133-114206843	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1217227	MAGI3	cis	cerebellum	SCAN
rs1217227	PHTF1	cis	parietal	SCAN
rs1217227	BCL2L15	cis	cerebellum	SCAN
rs1217227	MAGI3	cis	parietal	SCAN
rs1217227	SIKE1	cis	parietal	SCAN
rs1217227	PHTF1	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
2	chr1:114100600-114173400	Weak transcription	Gastric	stomach
3	chr1:114119000-114140400	Weak transcription	Fetal Stomach	stomach
4	chr1:114119200-114140400	Weak transcription	Esophagus	oesophagus
5	chr1:114119200-114145200	Weak transcription	Lung	lung
6	chr1:114119200-114172400	Weak transcription	Pancreas	Pancrea
7	chr1:114119200-114173000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:114122800-114142600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:114124200-114140200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:114124400-114172400	Weak transcription	Aorta	Aorta
11	chr1:114126600-114157200	Weak transcription	HUVEC	blood vessel
12	chr1:114128000-114140000	Weak transcription	Ovary	ovary
13	chr1:114132600-114143200	Weak transcription	NH-A	brain
14	chr1:114133400-114141000	Weak transcription	HMEC	breast
15	chr1:114134600-114166400	Weak transcription	Hela-S3	cervix
16	chr1:114135400-114140600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:114135400-114141600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:114135800-114141800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:114136200-114141200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr1:114136600-114140800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr1:114136800-114140400	Strong transcription	Placenta	Placenta
22	chr1:114136800-114142000	Weak transcription	Brain Angular Gyrus	brain
23	chr1:114136800-114158800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:114137000-114140200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:114137000-114141800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:114137000-114142000	Weak transcription	HSMMtube	muscle
27	chr1:114137000-114142400	Weak transcription	Fetal Thymus	thymus
28	chr1:114137000-114144000	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:114137000-114145200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr1:114137200-114140000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:114137200-114140000	Strong transcription	Adipose Nuclei	Adipose
32	chr1:114137400-114140400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:114137400-114141400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:114137800-114140400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:114138000-114142600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:114138200-114140600	ZNF genes & repeats	Fetal Kidney	kidney
37	chr1:114138400-114140400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:114138400-114140600	Strong transcription	NHDF-Ad	bronchial
39	chr1:114138400-114141000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:114138600-114139800	Weak transcription	Brain Germinal Matrix	brain
41	chr1:114138800-114140200	Weak transcription	Fetal Intestine Small	intestine
42	chr1:114138800-114140400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr1:114138800-114140600	ZNF genes & repeats	Fetal Lung	lung
44	chr1:114138800-114141000	ZNF genes & repeats	Fetal Intestine Large	intestine
45	chr1:114138800-114141200	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr1:114138800-114141200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:114138800-114141400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:114138800-114141400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:114138800-114141600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:114139400-114139800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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