Variant report

Variant	rs61820160
Chromosome Location	chr1:114183779-114183780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10858011	0.83[ASN][1000 genomes]
rs11102661	0.86[ASN][1000 genomes]
rs11102669	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1113523	0.81[ASN][1000 genomes]
rs1146182	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1146187	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217192	0.85[ASN][1000 genomes]
rs1217193	0.86[ASN][1000 genomes]
rs1217199	0.86[ASN][1000 genomes]
rs1217200	0.86[ASN][1000 genomes]
rs1217208	0.83[ASN][1000 genomes]
rs1217210	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217211	0.83[ASN][1000 genomes]
rs1217214	0.81[ASN][1000 genomes]
rs1217215	0.83[ASN][1000 genomes]
rs1217223	0.83[ASN][1000 genomes]
rs1217226	0.83[ASN][1000 genomes]
rs1217227	0.83[ASN][1000 genomes]
rs1217228	0.81[ASN][1000 genomes]
rs1217230	0.83[ASN][1000 genomes]
rs1217232	0.83[ASN][1000 genomes]
rs1217233	0.83[ASN][1000 genomes]
rs1217234	0.83[ASN][1000 genomes]
rs1217235	0.83[ASN][1000 genomes]
rs1217236	0.83[ASN][1000 genomes]
rs1217237	0.83[ASN][1000 genomes]
rs1228280	0.85[ASN][1000 genomes]
rs1230649	0.82[EUR][1000 genomes]
rs1230655	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1230658	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1230659	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1230663	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1230671	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1235687	0.81[ASN][1000 genomes]
rs1235688	0.83[ASN][1000 genomes]
rs1237289	0.83[ASN][1000 genomes]
rs12565589	0.85[ASN][1000 genomes]
rs1743605	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1777234	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1777237	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1777238	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1777241	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1936398	0.81[EUR][1000 genomes]
rs2636002	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2798135	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2798138	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4838997	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4839335	0.82[EUR][1000 genomes]
rs6537792	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012324	chr1:114135133-114206843	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3432773	chr1:114182779-114184777	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3403515	chr1:114183179-114184427	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114159000-114195000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:114159200-114194800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:114161600-114184600	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:114161600-114184600	Weak transcription	HepG2	liver
5	chr1:114161800-114199800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:114162200-114184600	Weak transcription	Left Ventricle	heart
7	chr1:114169200-114189400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:114169400-114184600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:114170800-114184600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:114171600-114241400	Weak transcription	Right Ventricle	heart
11	chr1:114172400-114184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:114172400-114192600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:114173000-114184600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:114173000-114184600	Weak transcription	Adipose Nuclei	Adipose
15	chr1:114173000-114214400	Weak transcription	Esophagus	oesophagus
16	chr1:114173000-114226800	Weak transcription	Aorta	Aorta
17	chr1:114173200-114184600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:114173200-114184600	Weak transcription	Ovary	ovary
19	chr1:114173400-114184600	Weak transcription	Primary T cells from cord blood	blood
20	chr1:114173600-114183800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr1:114173600-114184600	Weak transcription	Liver	Liver
22	chr1:114173600-114195000	Weak transcription	HMEC	breast
23	chr1:114173600-114206000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:114173800-114184600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:114173800-114184600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:114173800-114196200	Weak transcription	Gastric	stomach
27	chr1:114173800-114199600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:114173800-114201800	Weak transcription	Colonic Mucosa	Colon
29	chr1:114173800-114201800	Weak transcription	Lung	lung
30	chr1:114173800-114214400	Weak transcription	Pancreas	Pancrea
31	chr1:114173800-114236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:114174000-114184600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr1:114174000-114184600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:114179800-114239600	Weak transcription	Spleen	Spleen
35	chr1:114180400-114184600	Weak transcription	Brain Angular Gyrus	brain
36	chr1:114181200-114199400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:114181400-114184600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr1:114181800-114199800	Weak transcription	Fetal Brain Female	brain
39	chr1:114182000-114184600	Weak transcription	Brain Substantia Nigra	brain
40	chr1:114182000-114219600	Weak transcription	Fetal Kidney	kidney
41	chr1:114182200-114189200	Weak transcription	Placenta	Placenta
42	chr1:114182200-114197600	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:114182600-114187800	Weak transcription	Fetal Stomach	stomach
44	chr1:114182600-114189400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:114182600-114189400	Weak transcription	Osteobl	bone
46	chr1:114182600-114194800	Weak transcription	HSMM	muscle
47	chr1:114182600-114206200	Weak transcription	Hela-S3	cervix
48	chr1:114182800-114184400	Weak transcription	Fetal Intestine Large	intestine
49	chr1:114182800-114184600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:114182800-114184600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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