Variant report

Variant	rs72687973
Chromosome Location	chr1:114093421-114093422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114084981..114088872-chr1:114091176..114094977,3	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10745339	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10858000	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10858001	0.88[ASN][1000 genomes]
rs10858002	0.86[ASN][1000 genomes]
rs10858005	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10858007	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10858008	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10858011	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11102648	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11102649	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11102651	0.89[ASN][1000 genomes]
rs11102652	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11102653	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11102654	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11102657	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11102658	0.87[ASN][1000 genomes]
rs11102661	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11102669	0.81[ASN][1000 genomes]
rs1113523	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1146182	0.83[ASN][1000 genomes]
rs1146187	0.83[ASN][1000 genomes]
rs12021513	0.90[ASN][1000 genomes]
rs12035317	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12037873	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12039224	0.90[ASN][1000 genomes]
rs12043639	0.89[ASN][1000 genomes]
rs12074958	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12077419	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1217192	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1217193	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217199	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1217200	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217201	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217203	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217204	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1217208	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217210	0.83[ASN][1000 genomes]
rs1217211	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217214	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1217215	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217223	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217226	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217227	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217228	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1217230	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1217232	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217233	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217234	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217235	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217236	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217237	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1228280	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1230655	0.81[ASN][1000 genomes]
rs1230656	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1230658	0.81[ASN][1000 genomes]
rs1230659	0.81[ASN][1000 genomes]
rs1230661	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1230671	0.83[ASN][1000 genomes]
rs1235687	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1235688	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1237289	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12565589	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1343125	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1343128	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418957	0.88[ASN][1000 genomes]
rs1418958	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17013326	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17031716	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1743605	0.82[ASN][1000 genomes]
rs1777234	0.82[ASN][1000 genomes]
rs1777237	0.83[ASN][1000 genomes]
rs1777238	0.81[ASN][1000 genomes]
rs1777241	0.81[ASN][1000 genomes]
rs2153977	0.89[ASN][1000 genomes]
rs2798135	0.82[ASN][1000 genomes]
rs2798138	0.83[ASN][1000 genomes]
rs2884703	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2884704	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4274063	0.87[ASN][1000 genomes]
rs4456089	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4838997	0.81[ASN][1000 genomes]
rs6537792	0.81[ASN][1000 genomes]
rs6689879	0.91[ASN][1000 genomes]
rs6704188	0.89[ASN][1000 genomes]
rs72687980	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7536360	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
2	chr1:114082600-114100400	Weak transcription	Fetal Kidney	kidney
3	chr1:114083200-114099800	Weak transcription	Pancreas	Pancrea
4	chr1:114083400-114095200	Weak transcription	Liver	Liver
5	chr1:114083400-114100000	Weak transcription	Ovary	ovary
6	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:114084800-114095200	Weak transcription	Fetal Intestine Large	intestine
8	chr1:114084800-114095600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:114085600-114093600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:114085600-114094000	Weak transcription	HMEC	breast
11	chr1:114085600-114094200	Weak transcription	NHDF-Ad	bronchial
12	chr1:114085600-114101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:114088200-114102000	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:114088600-114099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:114088600-114101000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:114088800-114093800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:114088800-114094200	Weak transcription	NHEK	skin
19	chr1:114090400-114099800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:114090800-114093600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:114091000-114093600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:114091000-114099800	Weak transcription	Left Ventricle	heart
23	chr1:114091200-114093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:114091200-114093600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:114091200-114101800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:114091600-114093600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:114092000-114099600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr1:114092200-114099200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:114092400-114097200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:114092400-114099600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr1:114092400-114101600	Weak transcription	Adipose Nuclei	Adipose
32	chr1:114093200-114096200	Weak transcription	Fetal Intestine Small	intestine
33	chr1:114093400-114099800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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