Variant report

Variant	rs6698586
Chromosome Location	chr1:114249382-114249383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114248976..114251078-chr1:114251119..114252692,3	MCF-7	breast:
2	chr1:114240657..114244104-chr1:114245278..114249575,4	MCF-7	breast:
3	chr1:114240356..114244592-chr1:114247076..114250656,5	K562	blood:

Variant related genes	Relation type
ENSG00000232450	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10745339	0.82[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs10858000	0.82[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs10858005	0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs10858007	0.82[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs10858008	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs10858011	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs10858016	0.94[AFR][1000 genomes]
rs10858017	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10858018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10858019	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858021	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11102652	0.82[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs11102653	0.82[EUR][1000 genomes]
rs11102654	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs11102657	0.82[EUR][1000 genomes]
rs11102661	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11102669	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11102691	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs1111695	0.89[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1113523	0.82[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs1146180	0.81[AMR][1000 genomes]
rs1146182	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1146187	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12035317	0.82[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs12037873	0.82[CEU][hapmap]
rs12041547	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12044534	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12061482	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12063216	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12074958	0.82[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs12077419	0.82[EUR][1000 genomes]
rs1217192	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1217193	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1217199	0.81[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs1217200	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1217201	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs1217203	0.84[EUR][1000 genomes]
rs1217204	0.84[EUR][1000 genomes]
rs1217208	0.81[EUR][1000 genomes]
rs1217210	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1217211	0.82[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs1217214	0.83[EUR][1000 genomes]
rs1217215	0.82[EUR][1000 genomes]
rs1217223	0.84[EUR][1000 genomes]
rs1217226	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs1217227	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs1217228	0.82[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs1217230	0.83[EUR][1000 genomes]
rs1217232	0.84[EUR][1000 genomes]
rs1217233	0.84[EUR][1000 genomes]
rs1217234	0.89[ASW][hapmap];0.82[CEU][hapmap];0.81[CHB][hapmap];0.96[LWK][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs1217235	0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes]
rs1217236	0.82[CEU][hapmap];0.94[GIH][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs1217237	0.84[EUR][1000 genomes]
rs1217376	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217377	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217386	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1217388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217407	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217413	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1217415	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs1217416	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1217421	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1228280	0.80[EUR][1000 genomes]
rs1230637	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230638	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1230639	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1230640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230642	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230646	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230655	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1230656	0.86[EUR][1000 genomes]
rs1230658	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1230659	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1230661	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs1230663	0.90[EUR][1000 genomes]
rs1230671	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1230674	0.88[EUR][1000 genomes]
rs1230678	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230679	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230683	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1230685	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230687	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1235687	0.84[EUR][1000 genomes]
rs1235688	0.84[EUR][1000 genomes]
rs1237289	0.82[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs1237682	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12565589	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12566340	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs12760067	0.85[ASN][1000 genomes]
rs1343125	0.82[CEU][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs1343128	0.85[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs1418958	0.82[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs1599971	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17013326	0.81[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs17031716	0.86[CHB][hapmap]
rs1743605	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1746853	0.81[CHB][hapmap]
rs1775754	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1777234	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1777237	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1777238	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1777241	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1935838	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1936398	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981319	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2185971	0.81[ASW][hapmap]
rs2243471	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2295853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359167	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2488457	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2488458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2636002	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2636013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636014	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797408	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2797409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2797412	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2797414	0.81[ASW][hapmap];0.83[YRI][hapmap]
rs2798135	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2798138	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2884703	0.82[EUR][1000 genomes]
rs4145859	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4423005	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456089	0.82[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs4565712	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4600045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838997	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4838998	0.87[ASN][1000 genomes]
rs4839335	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61817589	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6537792	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6537795	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6663679	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689879	0.81[CHB][hapmap]
rs6704188	0.81[CHB][hapmap];0.83[MEX][hapmap]
rs72687980	0.82[EUR][1000 genomes]
rs7526209	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529353	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs7536360	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7553188	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9429730	1.00[CEU][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6698586	PHTF1	cis	parietal	SCAN
rs6698586	MAGI3	cis	cerebellum	SCAN
rs6698586	CAPZA1	cis	parietal	SCAN
rs6698586	MAGI3	cis	parietal	SCAN
rs6698586	PHTF1	cis	cerebellum	SCAN
rs6698586	BCL2L15	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114203200-114298600	Weak transcription	Fetal Brain Male	brain
2	chr1:114216200-114279800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:114216400-114250400	Weak transcription	Placenta	Placenta
4	chr1:114220400-114263800	Weak transcription	Fetal Kidney	kidney
5	chr1:114227000-114268200	Weak transcription	NHLF	lung
6	chr1:114227400-114252000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:114228000-114287800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:114228400-114249800	Weak transcription	Hela-S3	cervix
9	chr1:114231000-114251200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:114236400-114300000	Weak transcription	Small Intestine	intestine
11	chr1:114237400-114256600	Weak transcription	Colonic Mucosa	Colon
12	chr1:114238000-114251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:114238000-114252800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:114238000-114258200	Weak transcription	Fetal Heart	heart
15	chr1:114238200-114250200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:114238200-114252200	Weak transcription	Fetal Brain Female	brain
17	chr1:114238200-114256000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:114238200-114264400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:114238400-114266800	Weak transcription	NHEK	skin
20	chr1:114238800-114251000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:114238800-114252400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:114238800-114252800	Weak transcription	Fetal Intestine Large	intestine
23	chr1:114238800-114252800	Weak transcription	K562	blood
24	chr1:114239000-114260400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:114239200-114279800	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:114239400-114258600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:114239600-114249800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:114239800-114250800	Weak transcription	HepG2	liver
29	chr1:114240200-114260800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:114240200-114279400	Weak transcription	Psoas Muscle	Psoas
31	chr1:114242000-114300000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:114242200-114249400	Weak transcription	Lung	lung
33	chr1:114242200-114249600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:114242200-114249600	Weak transcription	HSMM	muscle
35	chr1:114242200-114250000	Weak transcription	Brain Angular Gyrus	brain
36	chr1:114242200-114250200	Weak transcription	Left Ventricle	heart
37	chr1:114242200-114250400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:114242200-114250400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:114242200-114250400	Weak transcription	Brain Anterior Caudate	brain
40	chr1:114242200-114250400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr1:114242200-114250800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:114242200-114250800	Weak transcription	Gastric	stomach
43	chr1:114242200-114250800	Weak transcription	Pancreas	Pancrea
44	chr1:114242200-114251200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr1:114242200-114252000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:114242200-114252000	Weak transcription	NHDF-Ad	bronchial
47	chr1:114242200-114252600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:114242200-114252800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:114242200-114252800	Weak transcription	Fetal Intestine Small	intestine
50	chr1:114242200-114256200	Weak transcription	Brain Inferior Temporal Lobe	brain

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