Variant report

Variant	rs1746853
Chromosome Location	chr1:114383097-114383098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114381641..114384215-chr1:114447992..114449980,2	K562	blood:
2	chr1:114382638..114384845-chr1:114488214..114490819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118655	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10858017	0.81[CHB][hapmap]
rs10858018	0.82[CHB][hapmap]
rs12041547	0.82[CHB][hapmap]
rs12061482	0.81[CHB][hapmap]
rs1217380	0.81[CHB][hapmap]
rs1217388	0.81[CHB][hapmap]
rs1217389	0.81[CHB][hapmap]
rs1217395	0.81[CHB][hapmap]
rs1217396	0.81[CHB][hapmap]
rs1217410	0.81[CHB][hapmap]
rs1217412	0.81[CHB][hapmap]
rs1217413	0.81[CHB][hapmap]
rs1230640	0.81[CHB][hapmap]
rs1230645	0.81[CHB][hapmap]
rs1230647	0.81[CHB][hapmap]
rs1230649	0.81[CHB][hapmap]
rs1230685	0.81[CHB][hapmap]
rs1237682	0.82[CHB][hapmap]
rs1936398	0.81[CHB][hapmap]
rs1981319	0.81[CHB][hapmap]
rs2093436	0.82[CHB][hapmap]
rs2295853	0.81[CHB][hapmap]
rs2359167	0.81[CHB][hapmap]
rs2488458	0.81[CHB][hapmap]
rs2636013	0.82[CHB][hapmap]
rs2797409	0.81[CHB][hapmap]
rs2797412	0.81[CHB][hapmap]
rs4145859	0.82[CHB][hapmap]
rs4600045	0.81[CHB][hapmap]
rs6698586	0.81[CHB][hapmap]
rs7522138	0.92[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1826178	chr1:114331645-114471583	Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv1842398	chr1:114331645-114471583	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1848035	chr1:114331645-114471583	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1746853	DCLRE1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114355000-114401000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:114355000-114401000	Weak transcription	Spleen	Spleen
3	chr1:114355800-114397400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:114355800-114413000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:114357000-114392200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:114361800-114390400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:114377600-114388400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:114377600-114388800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:114377600-114389200	Weak transcription	Dnd41	blood
10	chr1:114377600-114392800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:114377600-114392800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:114378000-114402600	Weak transcription	Colonic Mucosa	Colon
13	chr1:114378800-114385800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:114379000-114386400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr1:114379000-114393000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:114379200-114390400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr1:114379200-114391600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr1:114379800-114391400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:114380400-114384600	Weak transcription	GM12878-XiMat	blood
20	chr1:114381000-114383400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:114381000-114384400	Weak transcription	Thymus	Thymus
22	chr1:114381000-114384600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:114381000-114385800	Weak transcription	Primary B cells from cord blood	blood
24	chr1:114381000-114390000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:114381200-114383200	Weak transcription	Primary T cells from cord blood	blood
26	chr1:114381200-114383200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:114381200-114384000	Weak transcription	Fetal Thymus	thymus
28	chr1:114381200-114384600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:114381200-114386000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:114381200-114389000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:114381600-114388200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:114382200-114390200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr1:114382600-114392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr1:114382800-114389200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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