Variant report

Variant	rs12188624
Chromosome Location	chr5:94306972-94306973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10043438	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10452513	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463190	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12187469	0.94[ASN][1000 genomes]
rs13160334	0.94[ASN][1000 genomes]
rs13160349	0.94[ASN][1000 genomes]
rs13170123	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13180001	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1437120	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1437123	0.93[ASN][1000 genomes]
rs17422580	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1816583	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2347475	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2347476	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35060882	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35067093	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6556855	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66888822	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6859308	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6874512	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6890714	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6892227	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6892311	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6892740	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6894879	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7702101	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7703557	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7724110	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7731964	0.96[ASN][1000 genomes]
rs9885361	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94301200-94311000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94301200-94337600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94301600-94310800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94301800-94310800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94304600-94310800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:94305000-94307800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94305000-94310800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94305400-94310800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94305400-94310800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94305400-94310800	Weak transcription	Brain Anterior Caudate	brain
11	chr5:94305400-94316000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:94306000-94317200	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links