Variant report

Variant	rs1437123
Chromosome Location	chr5:94316968-94316969
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:94316942-94317402	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr5:94316910-94317014	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94311894..94314263-chr5:94314957..94317890,2	K562	blood:

Variant related genes	Relation type
MCTP1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10043438	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10070401	0.81[CEU][hapmap]
rs10452513	0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12187469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12188624	0.93[ASN][1000 genomes]
rs13160334	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13160349	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13170123	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13180001	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[ASN][1000 genomes]
rs13184310	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1437120	0.96[ASN][1000 genomes]
rs17422580	0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs1816583	0.96[ASN][1000 genomes]
rs2347475	0.97[ASN][1000 genomes]
rs2347476	0.97[ASN][1000 genomes]
rs35060882	0.96[ASN][1000 genomes]
rs35067093	0.96[ASN][1000 genomes]
rs6556855	0.96[ASN][1000 genomes]
rs66888822	0.96[ASN][1000 genomes]
rs6859308	0.96[ASN][1000 genomes]
rs6874512	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890714	0.92[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6892227	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs6892311	0.96[ASN][1000 genomes]
rs6892740	0.96[ASN][1000 genomes]
rs6894879	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7702101	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7703557	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7724110	0.97[ASN][1000 genomes]
rs7731964	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885361	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94301200-94337600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94306000-94317200	Weak transcription	HUVEC	blood vessel
3	chr5:94312200-94323000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94313600-94318800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:94313800-94337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94314000-94323200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:94314000-94325400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94314800-94323000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:94316000-94319200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:94316200-94318000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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