Variant report

Variant	rs6892227
Chromosome Location	chr5:94288790-94288791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10043438	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10452513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10463190	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12187469	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12188624	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13160334	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs13160349	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs13170123	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13180001	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1437120	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1437123	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs17422580	0.86[CHB][hapmap];0.87[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816583	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2347475	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2347476	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35060882	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35067093	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6556855	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66888822	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6859308	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6874512	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs6890714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892311	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6892740	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6894879	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7702101	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7703557	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7724110	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7731964	0.85[ASN][1000 genomes]
rs9885361	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405239	chr5:94288771-94290944	Strong transcription ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94272800-94290800	Weak transcription	Lung	lung
2	chr5:94274200-94289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:94275400-94290600	Weak transcription	Dnd41	blood
4	chr5:94278000-94290600	Weak transcription	GM12878-XiMat	blood
5	chr5:94282000-94289000	Weak transcription	Adipose Nuclei	Adipose
6	chr5:94285800-94289600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:94286000-94289000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94286200-94289200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94287200-94289000	Strong transcription	HUVEC	blood vessel
10	chr5:94287400-94289000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:94288000-94289000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:94288200-94294600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:94288400-94289200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:94288400-94291400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:94288600-94289000	Strong transcription	Primary hematopoietic stem cells	blood
16	chr5:94288600-94296600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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