Variant report

Variant	rs12195446
Chromosome Location	chr6:121893258-121893259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456943	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10457420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10457421	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209355	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2031300	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56887955	0.99[ASN][1000 genomes]
rs58972372	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62427968	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62429983	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62429984	0.82[AMR][1000 genomes]
rs62429985	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62429988	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62429989	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62429990	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62429991	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9398642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121892400-121895800	Enhancers	Fetal Intestine Large	intestine
2	chr6:121892600-121893800	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr6:121892600-121895000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:121892600-121895200	Weak transcription	Placenta	Placenta
5	chr6:121892800-121893400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:121892800-121895800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:121892800-121896000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:121893000-121893400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:121893200-121893800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:121893200-121894400	Weak transcription	Osteobl	bone
11	chr6:121893200-121894600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links