Variant report

Variant	rs9398642
Chromosome Location	chr6:121883200-121883201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456943	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10457420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10457421	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12195446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12209355	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2031300	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56887955	1.00[ASN][1000 genomes]
rs58972372	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62427968	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62429983	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62429984	0.82[AMR][1000 genomes]
rs62429985	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62429988	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62429989	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62429990	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62429991	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121873800-121885400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:121877600-121883600	Weak transcription	Placenta	Placenta
3	chr6:121879800-121883600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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