Variant report

Variant	rs56887955
Chromosome Location	chr6:121886983-121886984
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456943	0.91[ASN][1000 genomes]
rs10457421	0.91[ASN][1000 genomes]
rs12195446	0.99[ASN][1000 genomes]
rs1324093	1.00[AMR][1000 genomes]
rs17083751	1.00[AMR][1000 genomes]
rs58972372	0.88[ASN][1000 genomes]
rs62427968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62429988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62429989	0.84[ASN][1000 genomes]
rs62429990	0.91[ASN][1000 genomes]
rs62429991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398642	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121885400-121887000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:121886600-121887000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr6:121886600-121887000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links