Variant report

Variant	rs58972372
Chromosome Location	chr6:121867056-121867057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456943	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457420	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10457421	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12195446	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209355	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2031300	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56887955	0.88[ASN][1000 genomes]
rs62427968	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs62429983	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62429984	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62429985	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62429988	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs62429989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62429990	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62429991	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9398642	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv528731	chr6:121857609-121875648	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv526935	chr6:121860377-121875648	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121855000-121870800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121861400-121870600	Weak transcription	A549	lung
3	chr6:121865000-121870600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:121865200-121869400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:121866200-121869000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:121866200-121869200	Weak transcription	Osteobl	bone
7	chr6:121866400-121869200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:121866400-121869800	Weak transcription	NHDF-Ad	bronchial
9	chr6:121866600-121869000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:121867000-121867400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:121867000-121867400	Enhancers	NHEK	skin
12	chr6:121867000-121867600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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