Variant report
| Variant | rs12195893 |
|---|---|
| Chromosome Location | chr6:70309473-70309474 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:70307524..70310323-chr6:70316680..70319605,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10455689 | 0.81[ASN][1000 genomes] |
| rs10455690 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10455691 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10455698 | 0.88[ASN][1000 genomes] |
| rs10455699 | 0.88[ASN][1000 genomes] |
| rs10455700 | 0.88[ASN][1000 genomes] |
| rs12190396 | 0.81[ASN][1000 genomes] |
| rs12190402 | 0.81[ASN][1000 genomes] |
| rs12190864 | 0.81[ASN][1000 genomes] |
| rs12191015 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12191278 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12199762 | 0.81[ASN][1000 genomes] |
| rs12201242 | 0.81[ASN][1000 genomes] |
| rs12201853 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12202643 | 0.88[ASN][1000 genomes] |
| rs12202738 | 0.81[ASN][1000 genomes] |
| rs12202864 | 0.81[ASN][1000 genomes] |
| rs12203049 | 0.88[ASN][1000 genomes] |
| rs12206037 | 0.81[ASN][1000 genomes] |
| rs12208129 | 0.88[ASN][1000 genomes] |
| rs12209670 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12210125 | 0.88[ASN][1000 genomes] |
| rs12210683 | 0.88[ASN][1000 genomes] |
| rs12214229 | 0.81[ASN][1000 genomes] |
| rs12216085 | 0.81[ASN][1000 genomes] |
| rs12216407 | 0.81[ASN][1000 genomes] |
| rs60614865 | 0.88[ASN][1000 genomes] |
| rs6903829 | 0.81[ASN][1000 genomes] |
| rs6903838 | 0.81[ASN][1000 genomes] |
| rs6929485 | 0.81[ASN][1000 genomes] |
| rs7741429 | 0.88[ASN][1000 genomes] |
| rs7747174 | 0.81[ASN][1000 genomes] |
| rs7747318 | 0.81[ASN][1000 genomes] |
| rs7766977 | 0.81[ASN][1000 genomes] |
| rs7767301 | 0.81[ASN][1000 genomes] |
| rs9454847 | 0.88[ASN][1000 genomes] |
| rs9454848 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022847 | chr6:70300521-70337899 | Enhancers Bivalent Enhancer Weak transcription Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:70306600-70310200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
