Variant report

Variant	rs6903829
Chromosome Location	chr6:70294671-70294672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10455686	1.00[AMR][1000 genomes]
rs10455689	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10455690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455698	0.91[ASN][1000 genomes]
rs10455699	0.91[ASN][1000 genomes]
rs10455700	0.91[ASN][1000 genomes]
rs12190396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191278	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195151	1.00[AMR][1000 genomes]
rs12195893	0.81[ASN][1000 genomes]
rs12197551	1.00[AMR][1000 genomes]
rs12199762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202643	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12202738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203049	0.91[ASN][1000 genomes]
rs12206037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12206486	1.00[AMR][1000 genomes]
rs12208129	0.91[ASN][1000 genomes]
rs12209670	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210125	0.91[ASN][1000 genomes]
rs12210683	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12211815	1.00[AMR][1000 genomes]
rs12213515	1.00[AMR][1000 genomes]
rs12214229	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215588	1.00[AMR][1000 genomes]
rs12216085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60614865	0.91[ASN][1000 genomes]
rs6903838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741429	0.91[ASN][1000 genomes]
rs7747174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747318	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770631	1.00[AMR][1000 genomes]
rs9346302	1.00[AMR][1000 genomes]
rs9454810	1.00[AMR][1000 genomes]
rs9454847	0.91[ASN][1000 genomes]
rs9454848	0.91[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70291800-70294800	Weak transcription	Fetal Brain Male	brain
2	chr6:70292800-70296200	Enhancers	HSMM	muscle
3	chr6:70293600-70295800	Enhancers	HSMMtube	muscle
4	chr6:70293800-70295600	Enhancers	Colon Smooth Muscle	Colon
5	chr6:70294200-70295000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:70294200-70295400	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:70294200-70296200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:70294400-70294800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:70294400-70294800	Flanking Active TSS	Fetal Heart	heart
10	chr6:70294400-70295000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:70294400-70295000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:70294400-70295000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:70294400-70295600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:70294400-70295600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:70294400-70295600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:70294400-70295600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:70294600-70295200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:70294600-70295200	Enhancers	Brain Angular Gyrus	brain
19	chr6:70294600-70295400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:70294600-70295400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:70294600-70295600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:70294600-70295600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:70294600-70295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:70294600-70295600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:70294600-70295600	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:70294600-70295800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:70294600-70296000	Weak transcription	Placenta Amnion	Placenta Amnion

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