Variant report
| Variant | rs7770631 |
|---|---|
| Chromosome Location | chr6:70238408-70238409 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10455686 | 1.00[AMR][1000 genomes] |
| rs10455690 | 1.00[AMR][1000 genomes] |
| rs10455691 | 1.00[AMR][1000 genomes] |
| rs12190396 | 1.00[AMR][1000 genomes] |
| rs12190402 | 1.00[AMR][1000 genomes] |
| rs12190864 | 1.00[AMR][1000 genomes] |
| rs12191015 | 1.00[AMR][1000 genomes] |
| rs12191278 | 1.00[AMR][1000 genomes] |
| rs12195151 | 1.00[AMR][1000 genomes] |
| rs12197551 | 1.00[AMR][1000 genomes] |
| rs12199762 | 1.00[AMR][1000 genomes] |
| rs12201242 | 1.00[AMR][1000 genomes] |
| rs12201853 | 1.00[AMR][1000 genomes] |
| rs12202738 | 1.00[AMR][1000 genomes] |
| rs12202864 | 1.00[AMR][1000 genomes] |
| rs12203049 | 1.00[CEU][hapmap] |
| rs12206037 | 1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12206435 | 1.00[AMR][1000 genomes] |
| rs12206486 | 1.00[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12209670 | 1.00[AMR][1000 genomes] |
| rs12211815 | 1.00[AMR][1000 genomes] |
| rs12213515 | 1.00[AMR][1000 genomes] |
| rs12214229 | 1.00[AMR][1000 genomes] |
| rs12215588 | 1.00[AMR][1000 genomes] |
| rs12216085 | 1.00[AMR][1000 genomes] |
| rs12216407 | 1.00[AMR][1000 genomes] |
| rs6903829 | 1.00[AMR][1000 genomes] |
| rs6903838 | 1.00[AMR][1000 genomes] |
| rs6929485 | 1.00[AMR][1000 genomes] |
| rs7747174 | 1.00[AMR][1000 genomes] |
| rs7747318 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7766134 | 1.00[AMR][1000 genomes] |
| rs7766977 | 1.00[AMR][1000 genomes] |
| rs7767301 | 1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9346302 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9454806 | 0.85[AFR][1000 genomes] |
| rs9454810 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv11472 | chr6:70188989-70277993 | Enhancers Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 2 | nsv521077 | chr6:70214844-70279345 | Enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv521380 | chr6:70216262-70261307 | Enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:70237800-70238600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
