Variant report

Variant	rs12195151
Chromosome Location	chr6:70160308-70160309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10455224	1.00[JPT][hapmap]
rs10455686	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10455690	1.00[AMR][1000 genomes]
rs10455691	1.00[AMR][1000 genomes]
rs10485250	1.00[JPT][hapmap]
rs12190396	1.00[AMR][1000 genomes]
rs12190402	1.00[AMR][1000 genomes]
rs12190864	1.00[AMR][1000 genomes]
rs12191015	1.00[AMR][1000 genomes]
rs12191278	1.00[AMR][1000 genomes]
rs12197551	1.00[AMR][1000 genomes]
rs12199762	1.00[AMR][1000 genomes]
rs12201242	1.00[AMR][1000 genomes]
rs12201853	1.00[AMR][1000 genomes]
rs12202738	1.00[AMR][1000 genomes]
rs12202864	1.00[AMR][1000 genomes]
rs12206037	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs12206435	1.00[AMR][1000 genomes]
rs12206486	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12209670	1.00[AMR][1000 genomes]
rs12211815	1.00[AMR][1000 genomes]
rs12213515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214229	1.00[AMR][1000 genomes]
rs12215588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12216085	1.00[AMR][1000 genomes]
rs12216407	1.00[AMR][1000 genomes]
rs1283466	1.00[JPT][hapmap]
rs1296346	1.00[JPT][hapmap]
rs1321973	1.00[JPT][hapmap]
rs1328725	1.00[JPT][hapmap]
rs1410700	1.00[JPT][hapmap]
rs1410701	1.00[JPT][hapmap]
rs17748715	1.00[JPT][hapmap]
rs2094596	0.89[ASN][1000 genomes]
rs2770314	1.00[ASN][1000 genomes]
rs4142263	1.00[JPT][hapmap]
rs6903829	1.00[AMR][1000 genomes]
rs6903838	1.00[AMR][1000 genomes]
rs6911011	1.00[EUR][1000 genomes]
rs6929485	1.00[AMR][1000 genomes]
rs7747174	1.00[AMR][1000 genomes]
rs7747318	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7766134	1.00[AMR][1000 genomes]
rs7766977	1.00[AMR][1000 genomes]
rs7767301	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7769609	1.00[JPT][hapmap]
rs7770631	1.00[AMR][1000 genomes]
rs9346302	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9454810	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv5340	chr6:70156159-70200802	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70159800-70160600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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