Variant report

Variant	rs12206486
Chromosome Location	chr6:70224911-70224912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10455224	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10455686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10455690	1.00[AMR][1000 genomes]
rs10455691	1.00[AMR][1000 genomes]
rs10485250	1.00[JPT][hapmap]
rs12190396	1.00[AMR][1000 genomes]
rs12190402	1.00[AMR][1000 genomes]
rs12190864	1.00[AMR][1000 genomes]
rs12191015	1.00[AMR][1000 genomes]
rs12191278	1.00[AMR][1000 genomes]
rs12195151	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12197551	1.00[AMR][1000 genomes]
rs12199762	1.00[AMR][1000 genomes]
rs12201242	1.00[AMR][1000 genomes]
rs12201853	1.00[AMR][1000 genomes]
rs12202738	1.00[AMR][1000 genomes]
rs12202864	1.00[AMR][1000 genomes]
rs12203049	1.00[CEU][hapmap]
rs12206037	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs12206435	1.00[AMR][1000 genomes]
rs12209670	1.00[AMR][1000 genomes]
rs12211815	1.00[AMR][1000 genomes]
rs12213515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12214229	1.00[AMR][1000 genomes]
rs12215588	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216085	1.00[AMR][1000 genomes]
rs12216407	1.00[AMR][1000 genomes]
rs1283466	1.00[JPT][hapmap]
rs1296346	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1321973	1.00[JPT][hapmap]
rs1328725	1.00[JPT][hapmap]
rs1410700	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1410701	1.00[JPT][hapmap]
rs17748715	1.00[JPT][hapmap]
rs4142263	1.00[JPT][hapmap]
rs6903829	1.00[AMR][1000 genomes]
rs6903838	1.00[AMR][1000 genomes]
rs6911011	0.87[EUR][1000 genomes]
rs6929485	1.00[AMR][1000 genomes]
rs7747174	1.00[AMR][1000 genomes]
rs7747318	1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7766134	1.00[AMR][1000 genomes]
rs7766977	1.00[AMR][1000 genomes]
rs7767301	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7769609	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7770631	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9294827	1.00[CHD][hapmap]
rs9346302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9454810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021249	chr6:70186260-70237744	Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv11472	chr6:70188989-70277993	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv432922	chr6:70209079-70237636	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv432923	chr6:70209079-70238111	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv521077	chr6:70214844-70279345	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv528131	chr6:70216262-70233708	Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv521380	chr6:70216262-70261307	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv516477	chr6:70217661-70233708	Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70224200-70225800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:70224400-70225800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:70224600-70225200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:70224600-70225400	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:70224800-70225400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:70224800-70225400	Active TSS	iPS-15b Cell Line	embryonic stem cell

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