Variant report
| Variant | rs12215588 |
|---|---|
| Chromosome Location | chr6:70146294-70146295 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10455686 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10455690 | 1.00[AMR][1000 genomes] |
| rs10455691 | 1.00[AMR][1000 genomes] |
| rs12190396 | 1.00[AMR][1000 genomes] |
| rs12190402 | 1.00[AMR][1000 genomes] |
| rs12190864 | 1.00[AMR][1000 genomes] |
| rs12191015 | 1.00[AMR][1000 genomes] |
| rs12191278 | 1.00[AMR][1000 genomes] |
| rs12195151 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12197551 | 1.00[AMR][1000 genomes] |
| rs12199762 | 1.00[AMR][1000 genomes] |
| rs12201242 | 1.00[AMR][1000 genomes] |
| rs12201853 | 1.00[AMR][1000 genomes] |
| rs12202738 | 1.00[AMR][1000 genomes] |
| rs12202864 | 1.00[AMR][1000 genomes] |
| rs12206037 | 1.00[AMR][1000 genomes] |
| rs12206435 | 1.00[AMR][1000 genomes] |
| rs12206486 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12209670 | 1.00[AMR][1000 genomes] |
| rs12213515 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12214229 | 1.00[AMR][1000 genomes] |
| rs12216085 | 1.00[AMR][1000 genomes] |
| rs12216407 | 1.00[AMR][1000 genomes] |
| rs2770314 | 0.89[ASN][1000 genomes] |
| rs6903829 | 1.00[AMR][1000 genomes] |
| rs6903838 | 1.00[AMR][1000 genomes] |
| rs6911011 | 1.00[EUR][1000 genomes] |
| rs6929485 | 1.00[AMR][1000 genomes] |
| rs7747174 | 1.00[AMR][1000 genomes] |
| rs7747318 | 1.00[AMR][1000 genomes] |
| rs7766134 | 1.00[AMR][1000 genomes] |
| rs7766977 | 1.00[AMR][1000 genomes] |
| rs7767301 | 1.00[AMR][1000 genomes] |
| rs7770631 | 1.00[AMR][1000 genomes] |
| rs9346302 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9454810 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432919 | chr6:69873179-70221322 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:70146000-70146400 | Enhancers | Brain Germinal Matrix | brain |
