Variant report

Variant	rs9454848
Chromosome Location	chr6:70335473-70335474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70335202..70336820-chr6:70342123..70344117,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10455689	0.91[ASN][1000 genomes]
rs10455690	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10455691	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10455698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190396	0.91[ASN][1000 genomes]
rs12190402	0.91[ASN][1000 genomes]
rs12190864	0.91[ASN][1000 genomes]
rs12191015	0.91[ASN][1000 genomes]
rs12191278	0.91[ASN][1000 genomes]
rs12195893	0.88[ASN][1000 genomes]
rs12199762	0.91[ASN][1000 genomes]
rs12201242	0.91[ASN][1000 genomes]
rs12201853	0.91[ASN][1000 genomes]
rs12202643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202738	0.91[ASN][1000 genomes]
rs12202864	0.91[ASN][1000 genomes]
rs12203049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12208129	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209670	0.91[ASN][1000 genomes]
rs12210125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211815	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12214229	0.91[ASN][1000 genomes]
rs12216085	0.91[ASN][1000 genomes]
rs12216407	0.91[ASN][1000 genomes]
rs60614865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903829	0.91[ASN][1000 genomes]
rs6903838	0.91[ASN][1000 genomes]
rs6929485	0.91[ASN][1000 genomes]
rs7741429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747174	0.91[ASN][1000 genomes]
rs7747318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7766977	0.91[ASN][1000 genomes]
rs7767301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9454847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022847	chr6:70300521-70337899	Enhancers Bivalent Enhancer Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70329400-70341400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:70333800-70341000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:70335200-70335600	Enhancers	Placenta	Placenta
4	chr6:70335400-70335600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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