Variant report

Variant	rs12210125
Chromosome Location	chr6:70327819-70327820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:70327680-70327830	GM12872	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000265362	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10455689	0.91[ASN][1000 genomes]
rs10455690	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10455691	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10455698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455699	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190396	0.91[ASN][1000 genomes]
rs12190402	0.91[ASN][1000 genomes]
rs12190864	0.91[ASN][1000 genomes]
rs12191015	0.91[ASN][1000 genomes]
rs12191278	0.91[ASN][1000 genomes]
rs12195893	0.88[ASN][1000 genomes]
rs12199762	0.91[ASN][1000 genomes]
rs12201242	0.91[ASN][1000 genomes]
rs12201853	0.91[ASN][1000 genomes]
rs12202643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202738	0.91[ASN][1000 genomes]
rs12202864	0.91[ASN][1000 genomes]
rs12203049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206037	0.91[ASN][1000 genomes]
rs12208129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209670	0.91[ASN][1000 genomes]
rs12210683	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211815	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12214229	0.91[ASN][1000 genomes]
rs12216085	0.91[ASN][1000 genomes]
rs12216407	0.91[ASN][1000 genomes]
rs60614865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903829	0.91[ASN][1000 genomes]
rs6903838	0.91[ASN][1000 genomes]
rs6929485	0.91[ASN][1000 genomes]
rs7741429	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747174	0.91[ASN][1000 genomes]
rs7747318	0.91[ASN][1000 genomes]
rs7766977	0.91[ASN][1000 genomes]
rs7767301	0.91[ASN][1000 genomes]
rs9454847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022847	chr6:70300521-70337899	Enhancers Bivalent Enhancer Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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