Variant report

Variant	rs12197945
Chromosome Location	chr6:54684956-54684957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10456175	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10948858	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12190982	0.82[EUR][1000 genomes]
rs12195610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12196417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12198000	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12198696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12199020	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203906	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12203996	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12204479	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12205259	0.87[AMR][1000 genomes]
rs12205707	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12209581	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12210433	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12211620	0.94[EUR][1000 genomes]
rs12215996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12216148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12216154	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12216371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28819710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913635	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6904875	1.00[EUR][1000 genomes]
rs6915978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955751	1.00[EUR][1000 genomes]
rs72955777	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72957543	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72957545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72957569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72957574	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72957593	0.83[EUR][1000 genomes]
rs72967427	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967428	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7745529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745648	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751328	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9464136	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9474995	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9475003	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9475012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475015	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9475016	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9475022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475025	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9475028	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54683400-54689600	Weak transcription	Pancreas	Pancrea

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