Variant report
Variant | rs12190982 |
---|---|
Chromosome Location | chr6:54654952-54654953 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10456175 | 0.82[EUR][1000 genomes] |
rs10948858 | 0.82[EUR][1000 genomes] |
rs12195610 | 0.82[EUR][1000 genomes] |
rs12196417 | 0.82[EUR][1000 genomes] |
rs12196807 | 0.94[EUR][1000 genomes] |
rs12197945 | 0.82[EUR][1000 genomes] |
rs12198000 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12198696 | 0.82[EUR][1000 genomes] |
rs12199020 | 0.89[EUR][1000 genomes] |
rs12203906 | 0.82[EUR][1000 genomes] |
rs12203996 | 0.82[EUR][1000 genomes] |
rs12204479 | 0.82[EUR][1000 genomes] |
rs12205707 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12209581 | 0.82[EUR][1000 genomes] |
rs12211620 | 0.88[EUR][1000 genomes] |
rs12215996 | 0.82[EUR][1000 genomes] |
rs12216148 | 0.82[EUR][1000 genomes] |
rs12216154 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12216371 | 0.82[EUR][1000 genomes] |
rs28819710 | 0.82[EUR][1000 genomes] |
rs3913635 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6904875 | 0.82[EUR][1000 genomes] |
rs6915978 | 0.82[EUR][1000 genomes] |
rs72955751 | 0.82[EUR][1000 genomes] |
rs72955777 | 0.82[EUR][1000 genomes] |
rs72955781 | 0.82[EUR][1000 genomes] |
rs72955782 | 0.82[EUR][1000 genomes] |
rs72957545 | 0.82[EUR][1000 genomes] |
rs72957569 | 0.82[EUR][1000 genomes] |
rs72957574 | 0.82[EUR][1000 genomes] |
rs72967427 | 0.89[EUR][1000 genomes] |
rs7745529 | 0.82[EUR][1000 genomes] |
rs7745648 | 0.82[EUR][1000 genomes] |
rs9464136 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs9474995 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9475003 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs9475012 | 0.82[EUR][1000 genomes] |
rs9475022 | 0.82[EUR][1000 genomes] |
rs9475023 | 0.82[EUR][1000 genomes] |
rs9475025 | 0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv885902 | chr6:54588069-54656673 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv437968 | chr6:54651356-54660245 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:54653200-54667800 | Weak transcription | Placenta Amnion | Placenta Amnion |