Variant report
Variant | rs12211620 |
---|---|
Chromosome Location | chr6:54701568-54701569 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
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rs_ID | r2[population] |
---|---|
rs10456175 | 0.94[EUR][1000 genomes] |
rs10948858 | 0.94[EUR][1000 genomes] |
rs12190982 | 0.88[EUR][1000 genomes] |
rs12195610 | 0.94[EUR][1000 genomes] |
rs12196417 | 0.94[EUR][1000 genomes] |
rs12196807 | 0.81[EUR][1000 genomes] |
rs12197945 | 0.94[EUR][1000 genomes] |
rs12198000 | 0.89[EUR][1000 genomes] |
rs12198696 | 0.94[EUR][1000 genomes] |
rs12199020 | 0.89[EUR][1000 genomes] |
rs12199500 | 1.00[AMR][1000 genomes] |
rs12203166 | 1.00[AMR][1000 genomes] |
rs12203906 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12203996 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12204479 | 0.94[EUR][1000 genomes] |
rs12205259 | 1.00[AFR][1000 genomes] |
rs12205593 | 1.00[AMR][1000 genomes] |
rs12205707 | 0.84[EUR][1000 genomes] |
rs12209581 | 0.94[EUR][1000 genomes] |
rs12210433 | 0.89[EUR][1000 genomes] |
rs12215996 | 0.94[EUR][1000 genomes] |
rs12216148 | 0.94[EUR][1000 genomes] |
rs12216154 | 0.89[EUR][1000 genomes] |
rs12216371 | 0.94[EUR][1000 genomes] |
rs28819710 | 0.94[EUR][1000 genomes] |
rs3913635 | 0.89[EUR][1000 genomes] |
rs6904875 | 0.94[EUR][1000 genomes] |
rs6915978 | 0.94[EUR][1000 genomes] |
rs72954818 | 1.00[AMR][1000 genomes] |
rs72954824 | 1.00[AMR][1000 genomes] |
rs72954829 | 1.00[AMR][1000 genomes] |
rs72954849 | 1.00[AMR][1000 genomes] |
rs72955751 | 0.94[EUR][1000 genomes] |
rs72955777 | 0.94[EUR][1000 genomes] |
rs72955781 | 0.94[EUR][1000 genomes] |
rs72955782 | 0.94[EUR][1000 genomes] |
rs72957545 | 0.94[EUR][1000 genomes] |
rs72957569 | 0.94[EUR][1000 genomes] |
rs72957574 | 0.94[EUR][1000 genomes] |
rs72957593 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs72967427 | 0.89[EUR][1000 genomes] |
rs72967428 | 0.81[EUR][1000 genomes] |
rs7744880 | 0.90[AMR][1000 genomes] |
rs7745529 | 0.94[EUR][1000 genomes] |
rs7745648 | 0.94[EUR][1000 genomes] |
rs7751328 | 0.84[EUR][1000 genomes] |
rs9464136 | 0.89[EUR][1000 genomes] |
rs9474995 | 0.84[EUR][1000 genomes] |
rs9475003 | 0.89[EUR][1000 genomes] |
rs9475012 | 0.94[EUR][1000 genomes] |
rs9475015 | 0.82[EUR][1000 genomes] |
rs9475016 | 0.82[EUR][1000 genomes] |
rs9475022 | 0.94[EUR][1000 genomes] |
rs9475023 | 0.94[EUR][1000 genomes] |
rs9475025 | 0.94[EUR][1000 genomes] |
rs9475028 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | esv2763553 | chr6:54687979-54820487 | Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:54700400-54701600 | Weak transcription | HMEC | breast |