Variant report

Variant	rs12202740
Chromosome Location	chr6:74879515-74879516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1112039	0.80[AMR][1000 genomes]
rs1319623	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1319624	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1387416	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1489375	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1615828	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1622964	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1686317	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1686319	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1760636	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1760649	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1760658	0.80[AMR][1000 genomes]
rs1767853	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1767855	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1767858	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1767859	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1767861	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1768302	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1931283	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2635103	0.83[AMR][1000 genomes]
rs2635114	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2635116	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2781209	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2781210	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2788972	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2788992	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7758470	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74877600-74879600	Weak transcription	Ovary	ovary
2	chr6:74878400-74880200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:74878600-74880400	Weak transcription	Fetal Stomach	stomach
4	chr6:74879400-74880800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:74879400-74880800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:74879400-74880800	Enhancers	HMEC	breast

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