Variant report

Variant	rs2788992
Chromosome Location	chr6:74970099-74970100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1038684	0.84[ASN][1000 genomes]
rs10485385	0.86[ASN][1000 genomes]
rs10485386	0.86[ASN][1000 genomes]
rs10485387	0.86[ASN][1000 genomes]
rs10805997	0.86[ASN][1000 genomes]
rs12175094	0.86[ASN][1000 genomes]
rs12202740	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12205065	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1319623	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1319624	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1387416	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1387418	0.86[ASN][1000 genomes]
rs1387420	0.86[ASN][1000 genomes]
rs1416395	0.84[ASN][1000 genomes]
rs1416396	0.84[ASN][1000 genomes]
rs1416397	0.86[ASN][1000 genomes]
rs1416398	0.86[ASN][1000 genomes]
rs1489375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1489380	0.86[ASN][1000 genomes]
rs1552564	0.86[ASN][1000 genomes]
rs1552565	0.86[ASN][1000 genomes]
rs1615828	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1622964	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1686317	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1686318	0.82[AMR][1000 genomes]
rs1686319	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16884558	0.86[ASN][1000 genomes]
rs16884590	0.86[ASN][1000 genomes]
rs1760635	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1760636	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1760649	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1767853	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1767855	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1767858	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1767859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1767861	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1768302	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1844317	0.86[ASN][1000 genomes]
rs1931283	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1953176	0.86[ASN][1000 genomes]
rs2029393	0.86[ASN][1000 genomes]
rs2200809	0.86[ASN][1000 genomes]
rs2635103	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2635111	0.82[AMR][1000 genomes]
rs2635112	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2635114	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2635115	0.84[AMR][1000 genomes]
rs2635116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781174	0.81[AFR][1000 genomes]
rs2781209	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2781210	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788972	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2788990	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2788991	0.83[AMR][1000 genomes]
rs4706577	0.86[ASN][1000 genomes]
rs4706578	0.86[ASN][1000 genomes]
rs4708141	0.86[ASN][1000 genomes]
rs4708142	0.86[ASN][1000 genomes]
rs60997457	0.86[ASN][1000 genomes]
rs67514214	0.86[ASN][1000 genomes]
rs73460274	0.84[ASN][1000 genomes]
rs763672	0.84[AMR][1000 genomes]
rs7752957	0.86[ASN][1000 genomes]
rs9293958	0.86[ASN][1000 genomes]
rs9293959	0.86[ASN][1000 genomes]
rs9293960	0.86[ASN][1000 genomes]
rs9293962	0.86[ASN][1000 genomes]
rs9293964	0.86[ASN][1000 genomes]
rs9341460	0.86[ASN][1000 genomes]
rs9341461	0.85[ASN][1000 genomes]
rs9343123	0.85[ASN][1000 genomes]
rs9343127	0.86[ASN][1000 genomes]
rs9343128	0.86[ASN][1000 genomes]
rs9352083	0.85[ASN][1000 genomes]
rs9352084	0.86[ASN][1000 genomes]
rs9352085	0.86[ASN][1000 genomes]
rs9352087	0.86[ASN][1000 genomes]
rs9359076	0.86[ASN][1000 genomes]
rs9360757	0.86[ASN][1000 genomes]
rs9360759	0.86[ASN][1000 genomes]
rs9360761	0.86[ASN][1000 genomes]
rs9360763	0.86[ASN][1000 genomes]
rs9360766	0.86[ASN][1000 genomes]
rs9360769	0.86[ASN][1000 genomes]
rs9360770	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74969000-74970200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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