Variant report

Variant	rs12205921
Chromosome Location	chr6:27113540-27113541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr6:27112984-27114220	GM18505	blood:	n/a	n/a
2	POLR2A	chr6:27112994-27115930	HUVEC	blood vessel:	n/a	n/a
3	CREB1	chr6:27112952-27114288	K562	blood:	n/a	n/a
4	BRCA1	chr6:27113296-27114076	GM12878	blood:	n/a	n/a
5	MYC	chr6:27113373-27114263	K562	blood:	n/a	chr6:27114108-27114115 chr6:27114106-27114119 chr6:27114110-27114117 chr6:27114107-27114118
6	ETS1	chr6:27113344-27114245	A549	lung:	n/a	chr6:27113856-27113865 chr6:27113909-27113926 chr6:27113855-27113868 chr6:27113856-27113870 chr6:27113910-27113921 chr6:27113880-27113887 chr6:27113908-27113921 chr6:27113853-27113868 chr6:27113909-27113926
7	MTA3	chr6:27112914-27115851	GM12878	blood:	n/a	n/a
8	KAT2A	chr6:27113456-27114209	GM12878	blood:	n/a	n/a
9	TRIM28	chr6:27113154-27115634	K562	blood:	n/a	chr6:27115356-27115364
10	YY1	chr6:27113508-27114193	GM12878	blood:	n/a	chr6:27113800-27113810
11	NFIC	chr6:27112884-27115773	GM12878	blood:	n/a	n/a
12	ATF3	chr6:27113462-27114250	A549	lung:	n/a	n/a
13	MAX	chr6:27113466-27114229	K562	blood:	n/a	chr6:27114108-27114115 chr6:27114106-27114119 chr6:27114110-27114117 chr6:27114107-27114118
14	BCLAF1	chr6:27112957-27114249	GM12878	blood:	n/a	n/a
15	GABPA	chr6:27113499-27114264	MCF-7	breast:	n/a	n/a
16	SIN3AK20	chr6:27113521-27115586	SK-N-SH	brain:	n/a	n/a
17	SIX5	chr6:27113356-27115214	A549	lung:	n/a	n/a
18	MAX	chr6:27113421-27114255	SK-N-SH	brain:	n/a	chr6:27114108-27114115 chr6:27114106-27114119 chr6:27114110-27114117 chr6:27114107-27114118
19	YY1	chr6:27113459-27114046	GM12891	blood:	n/a	chr6:27113800-27113810
20	MAX	chr6:27113388-27114238	H1-hESC	embryonic stem cell:	n/a	chr6:27114108-27114115 chr6:27114106-27114119 chr6:27114110-27114117 chr6:27114107-27114118
21	POLR2A	chr6:27112296-27116595	MCF-7	breast:	n/a	n/a
22	USF1	chr6:27113374-27114176	HCT-116	colon:	n/a	n/a
23	TAF1	chr6:27113474-27115784	K562	blood:	n/a	n/a
24	POLR2A	chr6:27113092-27115940	GM18526	blood:	n/a	n/a
25	RELA	chr6:27113060-27115538	GM18951	blood:	n/a	n/a
26	POLR2A	chr6:27113167-27114254	U87	brain:	n/a	n/a
27	USF1	chr6:27113479-27114022	SK-N-SH_RA	brain:	n/a	n/a
28	ATF2	chr6:27112885-27114268	H1-hESC	embryonic stem cell:	n/a	n/a
29	IKZF1	chr6:27113324-27114152	GM12878	blood:	n/a	n/a
30	ETS1	chr6:27113519-27114182	GM12878	blood:	n/a	chr6:27113856-27113865 chr6:27113909-27113926 chr6:27113855-27113868 chr6:27113856-27113870 chr6:27113910-27113921 chr6:27113880-27113887 chr6:27113908-27113921 chr6:27113853-27113868 chr6:27113909-27113926
31	CBX3	chr6:27112933-27116168	K562	blood:	n/a	n/a
32	TRIM28	chr6:27113491-27114228	K562	blood:	n/a	n/a
33	RUNX3	chr6:27112884-27114252	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:27113383-27116004	MCF-7	breast:	n/a	n/a
35	RELA	chr6:27113006-27114182	GM12891	blood:	n/a	n/a
36	YY1	chr6:27113452-27114241	SK-N-SH	brain:	n/a	chr6:27113800-27113810
37	ZMIZ1	chr6:27113517-27114210	K562	blood:	n/a	n/a
38	TAF7	chr6:27112426-27116271	H1-hESC	embryonic stem cell:	n/a	n/a
39	BHLHE40	chr6:27113467-27114214	K562	blood:	n/a	n/a
40	PML	chr6:27113505-27114210	GM12878	blood:	n/a	n/a
41	SIN3A	chr6:27113375-27115563	H1-hESC	embryonic stem cell:	n/a	n/a
42	MAZ	chr6:27113349-27114223	Hela-S3	cervix:	n/a	chr6:27114108-27114115 chr6:27114106-27114119 chr6:27114110-27114117 chr6:27114107-27114118
43	ELF1	chr6:27113478-27114100	A549	lung:	n/a	chr6:27113852-27113865
44	MYC	chr6:27113533-27114217	K562	blood:	n/a	chr6:27114108-27114115 chr6:27114106-27114119 chr6:27114110-27114117 chr6:27114107-27114118
45	POLR2A	chr6:27113119-27115923	GM12892	blood:	n/a	n/a
46	YY1	chr6:27113437-27114168	SK-N-SH_RA	brain:	n/a	chr6:27113800-27113810
47	BCL3	chr6:27113196-27114271	A549	lung:	n/a	n/a
48	TCF12	chr6:27113476-27114132	A549	lung:	n/a	n/a
49	MEF2A	chr6:27112741-27114170	K562	blood:	n/a	chr6:27114149-27114160
50	NFATC1	chr6:27112985-27115736	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:27112142..27119511-chr6:27439134..27442830,9	K562	blood:
2	chr6:26554929..26556966-chr6:27111412..27114183,2	K562	blood:
3	chr6:26121790..26128581-chr6:27110404..27116881,10	MCF-7	breast:
4	chr6:26270164..26274435-chr6:27112425..27114820,4	MCF-7	breast:
5	chr6:27113113..27117592-chr6:27831181..27837403,7	MCF-7	breast:
6	chr6:27112984..27113562-chr7:138720169..138720678,2	Hela-S3	cervix:
7	chr6:26187666..26189518-chr6:27113172..27116022,2	K562	blood:
8	chr6:26155614..26159084-chr6:27112937..27118010,8	K562	blood:
9	chr6:26284926..26288844-chr6:27112544..27117256,7	MCF-7	breast:
10	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
11	chr6:26030074..26034864-chr6:27112849..27118591,14	K562	blood:
12	chr6:26156657..26159297-chr6:27111666..27115480,6	MCF-7	breast:
13	chr6:27112481..27114921-chr6:74229958..74232604,2	K562	blood:
14	chr5:10250152..10250793-chr6:27113380..27114339,2	Hela-S3	cervix:
15	chr6:26203848..26208105-chr6:27113189..27116345,6	MCF-7	breast:
16	chr6:26233781..26236628-chr6:27113286..27115220,2	K562	blood:
17	chr6:26537892..26540249-chr6:27112385..27115026,2	MCF-7	breast:
18	chr6:20402104..20404920-chr6:27112320..27114912,2	K562	blood:
19	chr6:26025218..26027872-chr6:27113164..27115614,4	MCF-7	breast:
20	chr11:47198019..47198588-chr6:27113497..27114449,2	Hela-S3	cervix:
21	chr6:26212513..26218940-chr6:27112008..27117016,14	K562	blood:
22	chr6:27112179..27114678-chr6:32937632..32940152,2	K562	blood:
23	chr6:26120836..26126141-chr6:27110374..27116911,13	K562	blood:
24	chr6:27111360..27127716-chr6:27768319..27787545,69	MCF-7	breast:
25	chr6:26029648..26033370-chr6:27113347..27116266,3	MCF-7	breast:
26	chr6:26103941..26105937-chr6:27113043..27115556,2	MCF-7	breast:
27	chr6:26021018..26024759-chr6:27113066..27116254,4	K562	blood:
28	chr21:40177663..40178343-chr6:27113539..27114763,3	Hela-S3	cervix:
29	chr6:27093465..27120217-chr6:27768366..27817187,256	K562	blood:
30	chr6:26552045..26554555-chr6:27112224..27114083,2	MCF-7	breast:
31	chr6:26026020..26027714-chr6:27113158..27114854,2	K562	blood:
32	chr6:26202461..26206307-chr6:27111685..27116147,8	K562	blood:
33	chr17:61903602..61905561-chr6:27112897..27115531,2	MCF-7	breast:
34	chr6:26284351..26289095-chr6:27111585..27113798,4	K562	blood:
35	chr6:26044121..26047112-chr6:27113025..27116157,4	MCF-7	breast:
36	chr6:27112528..27118803-chr6:27787647..27794623,16	K562	blood:
37	chr6:25992154..25994849-chr6:27113422..27115157,2	K562	blood:
38	chr6:26029987..26032449-chr6:27112365..27115475,3	MCF-7	breast:
39	chr6:27110323..27115581-chr6:27216717..27220429,5	K562	blood:
40	chr6:26233591..26237157-chr6:27111530..27113883,3	MCF-7	breast:
41	chr6:26283501..26289776-chr6:27108470..27116413,14	K562	blood:
42	chr16:2255073..2257159-chr6:27112351..27114040,2	MCF-7	breast:
43	chr6:27111904..27114162-chr6:27845915..27848477,2	K562	blood:
44	chr6:27112544..27115290-chr6:28699620..28702018,2	K562	blood:
45	chr6:26054867..26057868-chr6:27113403..27117423,5	K562	blood:
46	chr6:27113131..27119021-chr6:27794877..27801018,12	K562	blood:
47	chr6:26198041..26200502-chr6:27111670..27113721,2	MCF-7	breast:
48	chr6:26196234..26202173-chr6:27109710..27116918,20	K562	blood:
49	chr6:27113200..27117534-chr6:27802228..27806893,11	MCF-7	breast:
50	chr6:27113081..27116777-chr6:27832860..27836046,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2BJ-1	chr6:27110962-27113660	ENSG00000248252

Variant related genes	Relation type
MIR3143	TF binding region
HIST1H2AH	TF binding region
ENSG00000197153	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000167965	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000181577	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000202408	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000167996	Chromatin interaction
ENSG00000237425	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000269089	Chromatin interaction
ENSG00000252958	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000108592	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000087191	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000217646	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000272468	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000149182	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000157557	Chromatin interaction
ENSG00000235374	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000272462	Chromatin interaction
ENSG00000197381	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000150753	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000116560	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000180573	Chromatin interaction

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10456349	0.94[ASN][1000 genomes]
rs1062834	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10946896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10946900	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961179	0.94[ASN][1000 genomes]
rs11961181	0.94[ASN][1000 genomes]
rs11961960	0.83[ASN][1000 genomes]
rs11962196	0.94[ASN][1000 genomes]
rs11966939	0.94[ASN][1000 genomes]
rs11969887	0.94[ASN][1000 genomes]
rs12153912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12189835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12189964	0.81[EUR][1000 genomes]
rs12190201	0.94[ASN][1000 genomes]
rs12190473	1.00[JPT][hapmap]
rs12190859	0.83[ASN][1000 genomes]
rs12191280	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12191414	0.87[CEU][hapmap]
rs12192049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192320	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192446	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12192502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12192766	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192793	0.90[ASN][1000 genomes]
rs12193463	0.94[ASN][1000 genomes]
rs12193511	0.94[ASN][1000 genomes]
rs12193820	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194893	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12195041	0.94[ASN][1000 genomes]
rs12195144	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12196889	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12199218	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12200482	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12200985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12201498	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203145	0.94[ASN][1000 genomes]
rs12203454	0.94[ASN][1000 genomes]
rs12203728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204280	0.94[ASN][1000 genomes]
rs12204768	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs12205628	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12206996	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207614	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12208039	0.94[ASN][1000 genomes]
rs12208534	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209800	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12210905	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212317	0.94[ASN][1000 genomes]
rs12213361	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214848	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12215773	0.97[ASN][1000 genomes]
rs13207365	0.94[ASN][1000 genomes]
rs17345718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36048693	0.94[ASN][1000 genomes]
rs3800310	0.81[EUR][1000 genomes]
rs3922717	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3999221	0.94[ASN][1000 genomes]
rs41269245	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4541737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4636015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030955	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs5030958	0.82[EUR][1000 genomes]
rs6902012	1.00[CEU][hapmap]
rs6911234	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917419	0.91[CEU][hapmap]
rs6920115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6931711	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6937764	0.94[ASN][1000 genomes]
rs6937955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6938397	0.91[CEU][hapmap]
rs6940638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs72838236	0.94[ASN][1000 genomes]
rs72838238	0.94[ASN][1000 genomes]
rs72838243	0.94[ASN][1000 genomes]
rs72838245	0.94[ASN][1000 genomes]
rs72838249	0.94[ASN][1000 genomes]
rs72838258	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72838260	0.94[ASN][1000 genomes]
rs72838262	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72838263	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72838266	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72838268	0.97[ASN][1000 genomes]
rs72842200	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843609	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843611	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843613	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843615	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72843619	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843622	0.91[EUR][1000 genomes]
rs72843629	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72843633	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72843640	0.81[EUR][1000 genomes]
rs72843641	0.81[EUR][1000 genomes]
rs72843643	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72843644	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7740207	0.94[ASN][1000 genomes]
rs7753123	0.94[ASN][1000 genomes]
rs7753284	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7756481	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773336	0.94[ASN][1000 genomes]
rs858984	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs858985	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs858986	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs858989	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs858992	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs858995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9348752	0.91[CEU][hapmap]
rs9348756	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs9348759	0.91[CEU][hapmap]
rs9366690	0.89[CEU][hapmap]
rs9368500	0.91[CEU][hapmap]
rs9379970	1.00[CEU][hapmap]
rs9379975	0.91[CEU][hapmap];1.00[AFR][1000 genomes]
rs9393796	0.91[CEU][hapmap]
rs9393802	1.00[CEU][hapmap]
rs9393803	1.00[CEU][hapmap]
rs9461316	0.94[ASN][1000 genomes]
rs9467939	0.87[ASN][1000 genomes]
rs9467940	0.87[ASN][1000 genomes]
rs9467942	0.94[ASN][1000 genomes]
rs9467965	1.00[CEU][hapmap];0.94[ASN][1000 genomes]
rs9467971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27108800-27114000	Transcr. at gene 5' and 3'	K562	blood
2	chr6:27111200-27114200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:27111200-27116000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:27111400-27116000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:27111400-27116800	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:27111800-27114000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:27111800-27116000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:27112000-27115000	Active TSS	GM12878-XiMat	blood
9	chr6:27112000-27115800	Active TSS	Duodenum Mucosa	Duodenum
10	chr6:27112200-27114000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr6:27112200-27114200	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr6:27112200-27115200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr6:27112200-27115800	Active TSS	Fetal Intestine Large	intestine
14	chr6:27112200-27116000	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:27112200-27116000	Active TSS	A549	lung
16	chr6:27112200-27116200	Active TSS	H1 Cell Line	embryonic stem cell
17	chr6:27112400-27113800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:27112400-27113800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:27112400-27113800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:27112400-27114000	Flanking Active TSS	Liver	Liver
21	chr6:27112400-27114400	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr6:27112400-27115000	Active TSS	HMEC	breast
23	chr6:27112400-27115200	Active TSS	Fetal Thymus	thymus
24	chr6:27112400-27115600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:27112400-27115600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:27112400-27115800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:27112400-27115800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:27112400-27116000	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr6:27112400-27116000	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:27112400-27116000	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:27112400-27116000	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr6:27112400-27116200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:27112400-27116400	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr6:27112600-27113600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr6:27112600-27113600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:27112600-27113600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr6:27112600-27113800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:27112600-27113800	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr6:27112600-27115000	Active TSS	Muscle Satellite Cultured Cells	--
40	chr6:27112600-27115600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:27112600-27115600	Active TSS	Brain Angular Gyrus	brain
42	chr6:27112600-27115600	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr6:27112600-27115600	Active TSS	HSMM	muscle
44	chr6:27112600-27115600	Active TSS	NHLF	lung
45	chr6:27112600-27115800	Active TSS	Fetal Intestine Small	intestine
46	chr6:27112600-27115800	Active TSS	Fetal Kidney	kidney
47	chr6:27112800-27114800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:27112800-27115000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:27112800-27115000	Active TSS	Pancreas	Pancrea
50	chr6:27112800-27115200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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