Variant report

Variant	rs72843615
Chromosome Location	chr6:27150569-27150570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27113877..27115446-chr6:27148048..27151005,2	MCF-7	breast:
2	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
3	chr6:27148927..27151021-chr6:27440997..27443273,2	K562	blood:

Variant related genes	Relation type
ENSG00000184825	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10456349	0.85[ASN][1000 genomes]
rs1062834	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10946896	0.85[ASN][1000 genomes]
rs10946900	0.90[ASN][1000 genomes]
rs1102557	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961179	0.85[ASN][1000 genomes]
rs11961181	0.85[ASN][1000 genomes]
rs11962196	0.85[ASN][1000 genomes]
rs11966939	0.85[ASN][1000 genomes]
rs11969887	0.85[ASN][1000 genomes]
rs12153912	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12189835	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12189964	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12190201	0.85[ASN][1000 genomes]
rs12191280	0.80[EUR][1000 genomes]
rs12192049	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12192320	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12192446	0.90[ASN][1000 genomes]
rs12192502	0.85[ASN][1000 genomes]
rs12192766	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12192793	0.82[ASN][1000 genomes]
rs12193463	0.85[ASN][1000 genomes]
rs12193511	0.85[ASN][1000 genomes]
rs12193820	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12194893	1.00[AFR][1000 genomes]
rs12195041	0.85[ASN][1000 genomes]
rs12195144	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12195360	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12196084	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12196889	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12198077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12199218	0.85[ASN][1000 genomes]
rs12200482	0.80[EUR][1000 genomes]
rs12200985	0.85[ASN][1000 genomes]
rs12201498	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201774	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12203145	0.85[ASN][1000 genomes]
rs12203454	0.85[ASN][1000 genomes]
rs12203728	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12204280	0.85[ASN][1000 genomes]
rs12204768	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205628	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12205921	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12206996	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12207614	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208039	0.85[ASN][1000 genomes]
rs12208534	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209393	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209429	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209456	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209800	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12210905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212317	0.85[ASN][1000 genomes]
rs12213361	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214848	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12214930	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215241	0.88[ASN][1000 genomes]
rs12215773	0.88[ASN][1000 genomes]
rs13207365	0.85[ASN][1000 genomes]
rs17345718	0.85[ASN][1000 genomes]
rs2023467	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3531	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36048693	0.85[ASN][1000 genomes]
rs3800305	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3800306	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3800310	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3922717	0.85[ASN][1000 genomes]
rs3999221	0.85[ASN][1000 genomes]
rs41269245	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4541737	0.85[ASN][1000 genomes]
rs4636015	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5030955	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5030958	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67153537	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6911234	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6920115	0.85[ASN][1000 genomes]
rs6931711	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937764	0.85[ASN][1000 genomes]
rs6937955	0.85[ASN][1000 genomes]
rs6940638	0.88[ASN][1000 genomes]
rs72838236	0.85[ASN][1000 genomes]
rs72838238	0.85[ASN][1000 genomes]
rs72838243	0.85[ASN][1000 genomes]
rs72838245	0.85[ASN][1000 genomes]
rs72838249	0.85[ASN][1000 genomes]
rs72838258	0.85[ASN][1000 genomes]
rs72838260	0.85[ASN][1000 genomes]
rs72838262	0.85[ASN][1000 genomes]
rs72838263	0.85[ASN][1000 genomes]
rs72838266	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72838268	0.88[ASN][1000 genomes]
rs72842200	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72843607	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72843608	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72843609	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843611	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843613	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843619	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843622	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72843629	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843633	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843640	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843641	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843643	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72843644	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7740207	0.85[ASN][1000 genomes]
rs7753123	0.85[ASN][1000 genomes]
rs7753284	0.85[ASN][1000 genomes]
rs7756481	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7773336	0.85[ASN][1000 genomes]
rs858984	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs858985	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs858988	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs858989	0.81[EUR][1000 genomes]
rs858992	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs858995	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348756	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9379975	1.00[AFR][1000 genomes]
rs9461316	0.85[ASN][1000 genomes]
rs9467942	0.85[ASN][1000 genomes]
rs9467965	0.85[ASN][1000 genomes]
rs9467971	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27146600-27155800	Weak transcription	Spleen	Spleen
2	chr6:27146800-27155400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:27147000-27155000	Weak transcription	Right Atrium	heart
4	chr6:27147000-27155600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:27147600-27150800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:27148000-27151000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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