Variant report

Variant	rs72843619
Chromosome Location	chr6:27154830-27154831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27154198..27156038-chr6:27159087..27161685,2	MCF-7	breast:
2	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
3	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
4	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
5	chr6:27113069..27114668-chr6:27153428..27155363,2	K562	blood:
6	chr6:27150672..27153341-chr6:27153761..27155795,3	MCF-7	breast:
7	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
8	chr6:27144640..27146653-chr6:27152847..27154919,2	K562	blood:
9	chr6:27114727..27117926-chr6:27154560..27156609,3	K562	blood:
10	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
11	chr6:27154260..27155926-chr6:27167713..27170180,2	K562	blood:
12	chr6:27150639..27152459-chr6:27154596..27157395,2	MCF-7	breast:
13	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
14	chr6:27130956..27132580-chr6:27154818..27157126,2	K562	blood:
15	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
16	chr6:27154220..27156812-chr6:27776425..27779440,4	K562	blood:
17	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
18	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
19	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10456349	0.88[ASN][1000 genomes]
rs1062834	0.83[EUR][1000 genomes]
rs10946896	0.88[ASN][1000 genomes]
rs10946900	0.88[ASN][1000 genomes]
rs1102557	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11758615	0.80[ASN][1000 genomes]
rs11961179	0.88[ASN][1000 genomes]
rs11961181	0.88[ASN][1000 genomes]
rs11962196	0.88[ASN][1000 genomes]
rs11966939	0.88[ASN][1000 genomes]
rs11969887	0.88[ASN][1000 genomes]
rs12153912	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189835	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12189964	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12190201	0.88[ASN][1000 genomes]
rs12191280	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12192049	0.88[ASN][1000 genomes]
rs12192320	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12192446	0.88[ASN][1000 genomes]
rs12192502	0.88[ASN][1000 genomes]
rs12192766	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12192793	0.85[ASN][1000 genomes]
rs12193463	0.88[ASN][1000 genomes]
rs12193511	0.88[ASN][1000 genomes]
rs12193820	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12195041	0.88[ASN][1000 genomes]
rs12195144	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12195360	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12196084	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12196889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198077	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12199218	0.82[ASN][1000 genomes]
rs12200798	0.80[ASN][1000 genomes]
rs12200985	0.88[ASN][1000 genomes]
rs12201498	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12201774	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12203145	0.88[ASN][1000 genomes]
rs12203454	0.82[ASN][1000 genomes]
rs12203728	0.88[ASN][1000 genomes]
rs12204280	0.82[ASN][1000 genomes]
rs12204768	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205628	0.83[EUR][1000 genomes]
rs12205921	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12206996	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12207614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208039	0.88[ASN][1000 genomes]
rs12208534	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209393	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209429	0.88[ASN][1000 genomes]
rs12209456	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209800	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12210905	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12212317	0.88[ASN][1000 genomes]
rs12213361	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12214848	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12214930	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215241	0.85[ASN][1000 genomes]
rs12215773	0.85[ASN][1000 genomes]
rs13207365	0.82[ASN][1000 genomes]
rs17345718	0.88[ASN][1000 genomes]
rs2023467	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3531	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36048693	0.82[ASN][1000 genomes]
rs3800305	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800306	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800310	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3922717	0.82[ASN][1000 genomes]
rs3999221	0.88[ASN][1000 genomes]
rs41269245	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4541737	0.88[ASN][1000 genomes]
rs4636015	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5030955	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5030958	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67153537	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6911234	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920115	0.88[ASN][1000 genomes]
rs6931711	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937764	0.88[ASN][1000 genomes]
rs6937955	0.88[ASN][1000 genomes]
rs6940638	0.85[ASN][1000 genomes]
rs72838236	0.88[ASN][1000 genomes]
rs72838238	0.88[ASN][1000 genomes]
rs72838243	0.88[ASN][1000 genomes]
rs72838245	0.88[ASN][1000 genomes]
rs72838249	0.88[ASN][1000 genomes]
rs72838258	0.88[ASN][1000 genomes]
rs72838260	0.88[ASN][1000 genomes]
rs72838262	0.88[ASN][1000 genomes]
rs72838263	0.88[ASN][1000 genomes]
rs72838266	0.88[ASN][1000 genomes]
rs72838268	0.85[ASN][1000 genomes]
rs72842200	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843607	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843608	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843609	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843611	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843613	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843615	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843622	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72843629	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843633	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843640	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843641	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843643	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843644	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7740207	0.88[ASN][1000 genomes]
rs7753123	0.88[ASN][1000 genomes]
rs7753284	0.88[ASN][1000 genomes]
rs7756481	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7773336	0.88[ASN][1000 genomes]
rs858984	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs858985	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs858988	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs858989	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs858992	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs858995	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348756	0.80[EUR][1000 genomes]
rs9461316	0.88[ASN][1000 genomes]
rs9467939	0.82[ASN][1000 genomes]
rs9467940	0.82[ASN][1000 genomes]
rs9467942	0.88[ASN][1000 genomes]
rs9467965	0.88[ASN][1000 genomes]
rs9467971	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27146600-27155800	Weak transcription	Spleen	Spleen
2	chr6:27146800-27155400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:27147000-27155000	Weak transcription	Right Atrium	heart
4	chr6:27147000-27155600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:27154400-27155200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:27154400-27155400	Flanking Active TSS	K562	blood
7	chr6:27154800-27155000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:27154800-27155200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:27154800-27155200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:27154800-27155200	Enhancers	Fetal Lung	lung
11	chr6:27154800-27155400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links