Variant report

Variant	rs7756481
Chromosome Location	chr6:27115069-27115070
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:455)
CpG islands
(count:0)
Chromatin interactive
region (count:180)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:455 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr6:27114420-27115104	A549	lung:	n/a	chr6:27114621-27114632
2	POLR2A	chr6:27112994-27115930	HUVEC	blood vessel:	n/a	n/a
3	E2F6	chr6:27114344-27115333	K562	blood:	n/a	chr6:27114729-27114738 chr6:27114832-27114846 chr6:27114727-27114736 chr6:27114831-27114846 chr6:27114859-27114866 chr6:27114833-27114850 chr6:27114836-27114843 chr6:27114836-27114843 chr6:27114836-27114847 chr6:27114833-27114850 chr6:27114835-27114844 chr6:27114836-27114847 chr6:27114836-27114843 chr6:27114835-27114843 chr6:27114836-27114847
4	IRF4	chr6:27113770-27115407	GM12878	blood:	n/a	n/a
5	SIN3AK20	chr6:27114744-27115147	H1-hESC	embryonic stem cell:	n/a	n/a
6	BCL3	chr6:27114660-27115105	K562	blood:	n/a	n/a
7	SIN3AK20	chr6:27114396-27115232	A549	lung:	n/a	n/a
8	MAZ	chr6:27114474-27115487	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr6:27114752-27115195	HUVEC	blood vessel:	n/a	n/a
10	WRNIP1	chr6:27114484-27115482	GM12878	blood:	n/a	n/a
11	E2F6	chr6:27114662-27115156	H1-hESC	embryonic stem cell:	n/a	chr6:27114729-27114738 chr6:27114832-27114846 chr6:27114727-27114736 chr6:27114831-27114846 chr6:27114859-27114866 chr6:27114833-27114850 chr6:27114836-27114843 chr6:27114836-27114843 chr6:27114836-27114847 chr6:27114833-27114850 chr6:27114835-27114844 chr6:27114836-27114847 chr6:27114836-27114843 chr6:27114835-27114843 chr6:27114836-27114847
12	EP300	chr6:27114089-27115340	GM12878	blood:	n/a	n/a
13	SRF	chr6:27115050-27115346	GM12878	blood:	n/a	chr6:27115281-27115299
14	MYBL2	chr6:27113780-27115611	HepG2	liver:	n/a	n/a
15	SMARCB1	chr6:27114799-27115923	Hela-S3	cervix:	n/a	n/a
16	RELA	chr6:27114437-27115546	GM10847	blood:	n/a	n/a
17	MTA3	chr6:27112914-27115851	GM12878	blood:	n/a	n/a
18	GABPA	chr6:27114800-27115280	K562	blood:	n/a	n/a
19	TRIM28	chr6:27113154-27115634	K562	blood:	n/a	chr6:27115356-27115364
20	SP1	chr6:27114492-27115489	H1-hESC	embryonic stem cell:	n/a	chr6:27114777-27114798
21	TCF12	chr6:27114768-27115278	GM12878	blood:	n/a	n/a
22	NFIC	chr6:27112884-27115773	GM12878	blood:	n/a	n/a
23	MYC	chr6:27114637-27115130	NB4	blood:	n/a	n/a
24	SIN3A	chr6:27114460-27115496	GM12878	blood:	n/a	n/a
25	SIN3AK20	chr6:27113521-27115586	SK-N-SH	brain:	n/a	n/a
26	SIX5	chr6:27113356-27115214	A549	lung:	n/a	n/a
27	RCOR1	chr6:27114805-27115409	HepG2	liver:	n/a	n/a
28	YY1	chr6:27114783-27115352	GM12892	blood:	n/a	n/a
29	POLR2A	chr6:27112296-27116595	MCF-7	breast:	n/a	n/a
30	MAX	chr6:27114531-27115431	NB4	blood:	n/a	n/a
31	TAF1	chr6:27114537-27115234	MCF-7	breast:	n/a	n/a
32	TAF1	chr6:27113474-27115784	K562	blood:	n/a	n/a
33	ZEB1	chr6:27114828-27115211	GM12878	blood:	n/a	n/a
34	RELA	chr6:27114434-27115579	GM18505	blood:	n/a	n/a
35	CEBPB	chr6:27114668-27115444	IMR90	lung:	n/a	chr6:27115229-27115240
36	POLR2A	chr6:27113092-27115940	GM18526	blood:	n/a	n/a
37	REST	chr6:27114547-27115135	HL-60	blood:	n/a	n/a
38	POLR2A	chr6:27114765-27115302	A549	lung:	n/a	n/a
39	ARID3A	chr6:27114679-27115595	K562	blood:	n/a	chr6:27114835-27114843
40	RELA	chr6:27113060-27115538	GM18951	blood:	n/a	n/a
41	IRF1	chr6:27114521-27115529	K562	blood:	n/a	chr6:27114689-27114701
42	IRF3	chr6:27114533-27115100	Hela-S3	cervix:	n/a	chr6:27114689-27114701
43	HEY1	chr6:27114739-27115471	HepG2	liver:	n/a	n/a
44	SRF	chr6:27114558-27115166	MCF-7	breast:	n/a	n/a
45	ATF2	chr6:27114448-27115626	H1-hESC	embryonic stem cell:	n/a	chr6:27114727-27114738
46	ZNF143	chr6:27114492-27115224	Hela-S3	cervix:	n/a	n/a
47	IRF1	chr6:27114428-27115521	K562	blood:	n/a	chr6:27114689-27114701
48	EP300	chr6:27114490-27115587	GM12878	blood:	n/a	chr6:27115383-27115397
49	ZC3H11A	chr6:27114555-27115419	K562	blood:	n/a	n/a
50	POLR2A	chr6:27114829-27115231	HepG2	liver:	n/a	n/a

No data

(count:180 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr6:27112142..27119511-chr6:27439134..27442830,9	K562	blood:
2	chr6:27114807..27116319-chr6:34202953..34205471,2	K562	blood:
3	chr6:27113785..27116304-chr6:27356399..27358052,2	K562	blood:
4	chr6:27114767..27115443-chrX:102941460..102942167,2	Hela-S3	cervix:
5	chr1:150337019..150337853-chr6:27114402..27115364,2	Hela-S3	cervix:
6	chr4:76598334..76598872-chr6:27114635..27115350,2	Hela-S3	cervix:
7	chr6:26197678..26199478-chr6:27113722..27116433,2	MCF-7	breast:
8	chr17:56409173..56411263-chr6:27115051..27117528,3	K562	blood:
9	chr1:181057491..181058045-chr6:27114179..27115143,2	Hela-S3	cervix:
10	chr14:59950619..59951127-chr6:27114176..27115121,2	Hela-S3	cervix:
11	chr2:27631909..27632484-chr6:27114582..27115391,2	NB4	blood:
12	chr12:125398492..125399429-chr6:27114920..27115528,2	Hela-S3	cervix:
13	chr6:27114778..27115381-chr8:19171048..19171566,2	Hela-S3	cervix:
14	chr1:197169890..197170723-chr6:27114552..27115228,2	Hela-S3	cervix:
15	chr16:69759874..69760457-chr6:27114701..27115264,2	Hela-S3	cervix:
16	chr6:26121790..26128581-chr6:27110404..27116881,10	MCF-7	breast:
17	chr11:75140907..75141791-chr6:27114739..27115380,2	Hela-S3	cervix:
18	chr4:74124568..74125245-chr6:27114804..27115408,2	Hela-S3	cervix:
19	chr1:152009186..152009716-chr6:27114834..27115399,2	Hela-S3	cervix:
20	chr6:27113113..27117592-chr6:27831181..27837403,7	MCF-7	breast:
21	chr6:27114670..27118026-chr6:27440668..27442830,6	K562	blood:
22	chr3:50335266..50337009-chr6:27114656..27117147,2	K562	blood:
23	chr20:48599346..48600023-chr6:27114788..27115420,3	Hela-S3	cervix:
24	chr17:56735738..56736703-chr6:27114632..27115414,3	Hela-S3	cervix:
25	chr1:211432150..211433116-chr6:27114889..27115470,2	Hela-S3	cervix:
26	chr6:26187666..26189518-chr6:27113172..27116022,2	K562	blood:
27	chr16:3070233..3071215-chr6:27114918..27115461,2	Hela-S3	cervix:
28	chr1:116518507..116519501-chr6:27114629..27115334,2	Hela-S3	cervix:
29	chr6:27114921..27115555-chr6:30312632..30313449,2	Hela-S3	cervix:
30	chr6:26155614..26159084-chr6:27112937..27118010,8	K562	blood:
31	chr6:26284926..26288844-chr6:27112544..27117256,7	MCF-7	breast:
32	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
33	chr6:26030074..26034864-chr6:27112849..27118591,14	K562	blood:
34	chr6:26156657..26159297-chr6:27111666..27115480,6	MCF-7	breast:
35	chr6:27114411..27115174-chr8:22101970..22102819,2	Hela-S3	cervix:
36	chr6:27114657..27115306-chr7:75677088..75677874,2	Hela-S3	cervix:
37	chr13:91999950..92001498-chr6:27113724..27116525,2	K562	blood:
38	chr6:26203848..26208105-chr6:27113189..27116345,6	MCF-7	breast:
39	chr6:26233781..26236628-chr6:27113286..27115220,2	K562	blood:
40	chr6:26249395..26251593-chr6:27113655..27116155,2	MCF-7	breast:
41	chr6:26025218..26027872-chr6:27113164..27115614,4	MCF-7	breast:
42	chr6:26021190..26023372-chr6:27113779..27115327,2	MCF-7	breast:
43	chr6:27114659..27115286-chr7:75544178..75544997,2	HCT-116	colon:
44	chr6:26212513..26218940-chr6:27112008..27117016,14	K562	blood:
45	chr1:207494606..207495426-chr6:27114875..27115433,2	Hela-S3	cervix:
46	chr17:40811179..40811839-chr6:27114711..27115304,2	Hela-S3	cervix:
47	chr6:26120836..26126141-chr6:27110374..27116911,13	K562	blood:
48	chr6:27114501..27115321-chr6:27775840..27776467,3	Hela-S3	cervix:
49	chr6:27111360..27127716-chr6:27768319..27787545,69	MCF-7	breast:
50	chr15:75932185..75932831-chr6:27114664..27115333,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
MIR3143	TF binding region
HIST1H2BK	TF binding region
ENSG00000203724	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000150991	Chromatin interaction
ENSG00000196352	Chromatin interaction
ENSG00000124942	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000119682	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000087191	Chromatin interaction
ENSG00000125676	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000146701	Chromatin interaction
ENSG00000109381	Chromatin interaction
ENSG00000149243	Chromatin interaction
ENSG00000269089	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000208037	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000108592	Chromatin interaction
ENSG00000167996	Chromatin interaction
ENSG00000152022	Chromatin interaction
ENSG00000214670	Chromatin interaction
ENSG00000162783	Chromatin interaction
ENSG00000113356	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000265020	Chromatin interaction
ENSG00000137055	Chromatin interaction
ENSG00000272468	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000158553	Chromatin interaction
ENSG00000112983	Chromatin interaction
ENSG00000160753	Chromatin interaction
ENSG00000138757	Chromatin interaction
ENSG00000123562	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000130751	Chromatin interaction
ENSG00000241370	Chromatin interaction
ENSG00000127952	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000197381	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000181218	Chromatin interaction
ENSG00000257058	Chromatin interaction
ENSG00000198327	Chromatin interaction
ENSG00000265206	Chromatin interaction
ENSG00000143933	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000272462	Chromatin interaction
ENSG00000124613	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000131043	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000272173	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000037042	Chromatin interaction
ENSG00000180957	Chromatin interaction
ENSG00000198673	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000181704	Chromatin interaction
ENSG00000263011	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000196262	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000168137	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000124216	Chromatin interaction
ENSG00000263917	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000186792	Chromatin interaction
ENSG00000262001	Chromatin interaction
ENSG00000217646	Chromatin interaction
ENSG00000176055	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000235954	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000229117	Chromatin interaction
ENSG00000176890	Chromatin interaction
ENSG00000273391	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000168495	Chromatin interaction
ENSG00000163393	Chromatin interaction
ENSG00000181019	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000187266	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000206573	Chromatin interaction
ENSG00000092108	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000139832	Chromatin interaction
ENSG00000143303	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000250220	Chromatin interaction
ENSG00000061273	Chromatin interaction
ENSG00000126790	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000176912	Chromatin interaction
ENSG00000078124	Chromatin interaction
ENSG00000229980	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000142188	Chromatin interaction
ENSG00000114503	Chromatin interaction
ENSG00000078747	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000127948	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000162819	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000168615	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000115241	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000136826	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000117625	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000123352	Chromatin interaction
ENSG00000101695	Chromatin interaction
ENSG00000105193	Chromatin interaction
ENSG00000238923	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000197459	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000166881	Chromatin interaction
ENSG00000112984	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000177971	Chromatin interaction
ENSG00000202408	Chromatin interaction
ENSG00000235374	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000175634	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000188486	Chromatin interaction
ENSG00000134376	Chromatin interaction
ENSG00000135655	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000215417	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000143319	Chromatin interaction
ENSG00000186063	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000051108	Chromatin interaction
ENSG00000243477	Chromatin interaction
ENSG00000096872	Chromatin interaction
ENSG00000196235	Chromatin interaction
ENSG00000119616	Chromatin interaction
ENSG00000104611	Chromatin interaction
ENSG00000146963	Chromatin interaction
ENSG00000070047	Chromatin interaction
ENSG00000163435	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000163125	Chromatin interaction
ENSG00000237425	Chromatin interaction
ENSG00000270170	Chromatin interaction
ENSG00000130066	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000118412	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000268032	Chromatin interaction
ENSG00000234678	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000085433	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000196890	Chromatin interaction
ENSG00000115875	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000006327	Chromatin interaction
ENSG00000103152	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10456349	0.94[ASN][1000 genomes]
rs1062834	0.81[EUR][1000 genomes]
rs10946896	0.94[ASN][1000 genomes]
rs10946900	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102557	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961179	0.94[ASN][1000 genomes]
rs11961181	0.94[ASN][1000 genomes]
rs11961960	0.83[ASN][1000 genomes]
rs11962196	0.94[ASN][1000 genomes]
rs11966939	0.94[ASN][1000 genomes]
rs11969887	0.94[ASN][1000 genomes]
rs12153912	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12189835	0.81[EUR][1000 genomes]
rs12189964	0.81[EUR][1000 genomes]
rs12190201	0.94[ASN][1000 genomes]
rs12190859	0.83[ASN][1000 genomes]
rs12192049	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192320	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192446	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12192502	0.94[ASN][1000 genomes]
rs12192766	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192793	0.90[ASN][1000 genomes]
rs12193463	0.94[ASN][1000 genomes]
rs12193511	0.94[ASN][1000 genomes]
rs12193820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195041	0.94[ASN][1000 genomes]
rs12195144	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196084	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12196889	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198077	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12199218	0.94[ASN][1000 genomes]
rs12200482	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12200985	0.94[ASN][1000 genomes]
rs12201498	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201774	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203145	0.94[ASN][1000 genomes]
rs12203454	0.94[ASN][1000 genomes]
rs12203728	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204280	0.94[ASN][1000 genomes]
rs12205628	0.81[EUR][1000 genomes]
rs12205921	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206996	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207614	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12208039	0.94[ASN][1000 genomes]
rs12208534	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209393	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209429	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209456	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209800	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12210905	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212317	0.94[ASN][1000 genomes]
rs12213361	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214848	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214930	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215241	0.97[ASN][1000 genomes]
rs12215773	0.97[ASN][1000 genomes]
rs13207365	0.94[ASN][1000 genomes]
rs17345718	0.94[ASN][1000 genomes]
rs3531	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36048693	0.94[ASN][1000 genomes]
rs3800310	0.81[EUR][1000 genomes]
rs3922717	0.94[ASN][1000 genomes]
rs3999221	0.94[ASN][1000 genomes]
rs41269245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4541737	0.94[ASN][1000 genomes]
rs4636015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030955	0.82[EUR][1000 genomes]
rs5030958	0.82[EUR][1000 genomes]
rs6911234	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920115	0.94[ASN][1000 genomes]
rs6931711	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6937764	0.94[ASN][1000 genomes]
rs6937955	0.94[ASN][1000 genomes]
rs6940638	0.97[ASN][1000 genomes]
rs72838236	0.94[ASN][1000 genomes]
rs72838238	0.94[ASN][1000 genomes]
rs72838243	0.94[ASN][1000 genomes]
rs72838245	0.94[ASN][1000 genomes]
rs72838249	0.94[ASN][1000 genomes]
rs72838258	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72838260	0.94[ASN][1000 genomes]
rs72838262	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72838263	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72838266	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72838268	0.97[ASN][1000 genomes]
rs72842200	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843607	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843608	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843609	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843611	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843613	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72843615	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72843619	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72843622	0.91[EUR][1000 genomes]
rs72843629	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72843633	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72843640	0.81[EUR][1000 genomes]
rs72843641	0.81[EUR][1000 genomes]
rs72843643	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72843644	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7740207	0.94[ASN][1000 genomes]
rs7753123	0.94[ASN][1000 genomes]
rs7753284	0.94[ASN][1000 genomes]
rs7773336	0.94[ASN][1000 genomes]
rs858995	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9348752	0.81[CEU][hapmap]
rs9348756	1.00[JPT][hapmap]
rs9461316	0.94[ASN][1000 genomes]
rs9467939	0.87[ASN][1000 genomes]
rs9467940	0.87[ASN][1000 genomes]
rs9467942	0.94[ASN][1000 genomes]
rs9467965	0.94[ASN][1000 genomes]
rs9467971	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv970091	chr6:27114028-27115549	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	240 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27111200-27116000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:27111400-27116000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:27111400-27116800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:27111800-27116000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:27112000-27115800	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:27112200-27115200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr6:27112200-27115800	Active TSS	Fetal Intestine Large	intestine
8	chr6:27112200-27116000	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr6:27112200-27116000	Active TSS	A549	lung
10	chr6:27112200-27116200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:27112400-27115200	Active TSS	Fetal Thymus	thymus
12	chr6:27112400-27115600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:27112400-27115600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:27112400-27115800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:27112400-27115800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:27112400-27116000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:27112400-27116000	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:27112400-27116000	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:27112400-27116000	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:27112400-27116200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:27112400-27116400	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:27112600-27115600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:27112600-27115600	Active TSS	Brain Angular Gyrus	brain
24	chr6:27112600-27115600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:27112600-27115600	Active TSS	HSMM	muscle
26	chr6:27112600-27115600	Active TSS	NHLF	lung
27	chr6:27112600-27115800	Active TSS	Fetal Intestine Small	intestine
28	chr6:27112600-27115800	Active TSS	Fetal Kidney	kidney
29	chr6:27112800-27115200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:27112800-27115200	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr6:27112800-27115400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:27112800-27115400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:27112800-27115600	Active TSS	Colonic Mucosa	Colon
34	chr6:27112800-27115600	Active TSS	Thymus	Thymus
35	chr6:27112800-27115600	Active TSS	NHDF-Ad	bronchial
36	chr6:27112800-27115800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:27112800-27115800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:27112800-27115800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:27112800-27115800	Active TSS	Fetal Stomach	stomach
40	chr6:27113000-27115200	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr6:27113000-27115200	Active TSS	Colon Smooth Muscle	Colon
42	chr6:27113000-27115200	Active TSS	Placenta Amnion	Placenta Amnion
43	chr6:27113000-27115400	Active TSS	Esophagus	oesophagus
44	chr6:27113000-27115400	Active TSS	Small Intestine	intestine
45	chr6:27113000-27115600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:27113000-27115600	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr6:27113000-27115800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:27113000-27115800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:27113000-27116000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:27113200-27115400	Active TSS	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

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