Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1000105	0.84[EUR][1000 genomes]
rs1014989	0.83[EUR][1000 genomes]
rs10456275	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12189677	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12193599	0.87[EUR][1000 genomes]
rs12195976	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12200767	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12201667	0.87[EUR][1000 genomes]
rs12206849	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12213279	0.84[EUR][1000 genomes]
rs12215692	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12524992	0.85[AMR][1000 genomes]
rs17499234	0.84[EUR][1000 genomes]
rs17499906	0.81[EUR][1000 genomes]
rs17499955	0.80[EUR][1000 genomes]
rs55819149	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57279011	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58834120	0.85[EUR][1000 genomes]
rs59488676	0.85[EUR][1000 genomes]
rs72833813	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72833815	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7746629	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7746858	0.88[EUR][1000 genomes]
rs7754459	0.84[EUR][1000 genomes]
rs7766899	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs877615	0.87[EUR][1000 genomes]
rs9466852	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23534200-23537600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:23535800-23544200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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