Variant report

Variant	rs1000105
Chromosome Location	chr6:23584238-23584239
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23584056..23584725-chr6:23611938..23612497,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1014989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193599	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12200767	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201667	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12212208	0.84[EUR][1000 genomes]
rs12213279	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215692	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17499234	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499906	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17499955	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1923197	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923198	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197966	0.84[ASN][1000 genomes]
rs197968	0.84[ASN][1000 genomes]
rs199079	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs199081	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs199124	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57279011	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58834120	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59488676	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6456557	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917610	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746629	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746858	0.92[EUR][1000 genomes]
rs7754459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766899	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs877615	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460898	0.83[EUR][1000 genomes]
rs9466849	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9466850	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9466852	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23579600-23584400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:23582400-23585000	Active TSS	Liver	Liver
3	chr6:23583200-23585800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:23583800-23584400	Enhancers	HepG2	liver
5	chr6:23583800-23585400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:23584000-23585400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:23584000-23585400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:23584000-23585600	Enhancers	Fetal Intestine Large	intestine
9	chr6:23584200-23585200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:23584200-23585400	Enhancers	Fetal Intestine Small	intestine

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