Variant report

Variant	rs17499906
Chromosome Location	chr6:23590153-23590154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23588969..23590584-chr6:23597216..23599632,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1000105	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1014989	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12193599	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12200767	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12201667	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12212208	0.81[EUR][1000 genomes]
rs12213279	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12215692	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17499234	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17499955	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1923197	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1923198	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs199079	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs199081	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs199124	0.87[ASN][1000 genomes]
rs57279011	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58834120	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59488676	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6456557	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6917610	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7746629	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7746858	0.88[EUR][1000 genomes]
rs7754459	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7766899	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs877615	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9460898	0.87[EUR][1000 genomes]
rs9466849	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9466850	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9466852	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23588600-23590200	Weak transcription	HepG2	liver
2	chr6:23589600-23592200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:23589600-23592400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:23590000-23590800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:23590000-23591600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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