Variant report
| Variant | rs199081 |
|---|---|
| Chromosome Location | chr6:23553736-23553737 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:71632154..71634253-chr6:23552255..23554303,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000114861 | Chromatin interaction |
| ENSG00000270562 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1000105 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1014989 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12193599 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12200767 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12201667 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12213279 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12215692 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17499234 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17499906 | 0.83[ASN][1000 genomes] |
| rs1923197 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1923198 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs199079 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs199124 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57279011 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs58834120 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59488676 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6456557 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6917610 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7746629 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7746858 | 0.85[EUR][1000 genomes] |
| rs7754459 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7766899 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs877615 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422291 | chr6:23466080-23600459 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
