Variant report

Variant	rs1923197
Chromosome Location	chr6:23586488-23586489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1000105	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014989	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484536	0.85[AFR][1000 genomes]
rs11962912	0.85[AFR][1000 genomes]
rs11964231	0.86[AFR][1000 genomes]
rs11964407	0.85[AFR][1000 genomes]
rs12193599	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12200767	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201667	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12213279	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215692	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16887768	0.85[AFR][1000 genomes]
rs17499234	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499906	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17499955	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1883445	0.83[AFR][1000 genomes]
rs1885214	0.82[AFR][1000 genomes]
rs1885215	0.82[AFR][1000 genomes]
rs1885217	0.82[AFR][1000 genomes]
rs1923198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197966	0.84[ASN][1000 genomes]
rs197968	0.84[ASN][1000 genomes]
rs199079	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs199081	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs199124	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57279011	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58834120	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59488676	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6456556	0.85[AFR][1000 genomes]
rs6456557	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918862	0.82[AFR][1000 genomes]
rs7739794	0.85[AFR][1000 genomes]
rs7743934	0.85[AFR][1000 genomes]
rs7745620	0.81[AFR][1000 genomes]
rs7745792	0.82[AFR][1000 genomes]
rs7746217	0.82[AFR][1000 genomes]
rs7746629	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746858	0.82[EUR][1000 genomes]
rs7754459	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763961	0.86[AFR][1000 genomes]
rs7766806	0.82[AFR][1000 genomes]
rs7766899	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7769279	0.87[AFR][1000 genomes]
rs877615	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460895	0.85[AFR][1000 genomes]
rs9460896	0.83[AFR][1000 genomes]
rs9460897	0.84[AFR][1000 genomes]
rs9466841	0.81[AFR][1000 genomes]
rs9466842	0.85[AFR][1000 genomes]
rs9466843	0.82[AFR][1000 genomes]
rs9466844	0.83[AFR][1000 genomes]
rs9466845	0.85[AFR][1000 genomes]
rs9466849	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9466850	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9466852	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23584800-23587400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:23585000-23587600	Weak transcription	Liver	Liver
3	chr6:23585400-23587200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:23585400-23587400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:23585600-23587400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:23585800-23590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:23585800-23590000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:23586000-23587600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links