Variant report

Variant	rs12200767
Chromosome Location	chr6:23537674-23537675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1000105	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1014989	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12193599	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201667	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212208	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12213279	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215692	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499234	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17499906	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17499955	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1923197	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923198	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs197966	0.80[ASN][1000 genomes]
rs197968	0.80[ASN][1000 genomes]
rs199079	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs199081	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs199124	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57279011	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58834120	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59488676	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456557	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917610	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746629	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746858	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7754459	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7766899	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877615	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9466849	0.86[EUR][1000 genomes]
rs9466850	0.87[EUR][1000 genomes]
rs9466852	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23535800-23544200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:23537600-23538200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links