Variant report

Variant	rs12213399
Chromosome Location	chr6:149528325-149528326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11965012	0.90[EUR][1000 genomes]
rs12197526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12197595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12200718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12201953	0.90[EUR][1000 genomes]
rs12201961	0.90[EUR][1000 genomes]
rs12202447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12202776	0.81[EUR][1000 genomes]
rs12203964	0.85[EUR][1000 genomes]
rs12206090	0.90[EUR][1000 genomes]
rs12207651	0.90[EUR][1000 genomes]
rs12211226	0.81[EUR][1000 genomes]
rs13437225	0.90[EUR][1000 genomes]
rs60916218	0.90[EUR][1000 genomes]
rs73781703	0.90[EUR][1000 genomes]
rs73781705	0.90[EUR][1000 genomes]
rs73781708	0.90[EUR][1000 genomes]
rs73781709	0.90[EUR][1000 genomes]
rs73781711	0.85[EUR][1000 genomes]
rs73781712	0.85[EUR][1000 genomes]
rs73781713	0.85[EUR][1000 genomes]
rs9498253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498258	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149522800-149529000	Weak transcription	Fetal Heart	heart
2	chr6:149523600-149529200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:149524600-149530800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:149525000-149531000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:149528000-149529800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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