Variant report

Variant	rs12202776
Chromosome Location	chr6:149562986-149562987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10457845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12190668	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12197526	0.81[EUR][1000 genomes]
rs12197595	0.81[EUR][1000 genomes]
rs12200718	0.81[EUR][1000 genomes]
rs12202447	0.81[EUR][1000 genomes]
rs12204289	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12206090	0.82[EUR][1000 genomes]
rs12206694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12213399	0.81[EUR][1000 genomes]
rs9498253	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149558000-149563800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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