Variant report

Variant	rs12190668
Chromosome Location	chr6:149585139-149585140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUMO4-5	chr6:149583631-149585909	ucscGeneNc_uc003qmi_2

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10457845	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12202776	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12204289	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12206694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211226	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34522908	1.00[AFR][1000 genomes]
rs35410313	1.00[AFR][1000 genomes]
rs71568272	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149575400-149589200	Weak transcription	Spleen	Spleen
2	chr6:149581600-149586800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:149581600-149587200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:149582600-149586600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:149583000-149586600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:149583200-149585200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:149583200-149585400	Weak transcription	Dnd41	blood
8	chr6:149583200-149585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:149583400-149585200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149583400-149585200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:149583400-149585400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:149584400-149586200	Enhancers	Fetal Brain Male	brain
13	chr6:149584400-149587400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:149584400-149587400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:149584600-149585400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:149584600-149586800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:149584600-149587200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:149584600-149587800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:149584800-149585200	Enhancers	Psoas Muscle	Psoas
20	chr6:149584800-149586800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr6:149584800-149587000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:149584800-149587000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:149584800-149588200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:149585000-149585800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:149585000-149587200	Enhancers	Fetal Thymus	thymus

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